Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

3 accessions found for Meiothermus silvanus DSM 9946  

Data for CP002043  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002043.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002043_0271 CDS_301031-299532 44.1 2.8e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002043_0271 1/1 266 334 .. 1 87 [] 44.1 2.8e-13

Alignments of top-scoring domains:
CP002043_0271: domain 1 of 1, from 266 to 334: score 44.1, E = 2.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + sH+LRTPL a +++ l+le+++ +el+ee
CP002043_0 266 VIRDLIYAFSHDLRTPLMANAMNLRLALEGAY------GELPEEF-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ l++ + ll+L ++lL l+++e+g
CP002043_0 305 ----------KKSLRNGLEANQDLLELAEELLLLAQLESG 334


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 1 0|=
-12 9 6|==*==
-11 29 36|=============== *
-10 48 67|======================== *
-9 62 69|=============================== *
-8 54 52|=========================*=
-7 35 32|===============*==
-6 19 18|========*=
-5 12 10|====*=
-4 20 5|==*=======
-3 9 2|*====
-2 1 1|*
-1 1 0|=
0 1 0|=
1 1 0|=
2 0 0|
> 3 3 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 46.6033
P(chi-square) = 1.825e-07

Total sequences searched: 306

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: