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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Arcanobacterium haemolyticum DSM 20595  

Data for CP002045  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002045.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002045_1546 CDS_1760980-1762509 80.0 1.1e-22 1
CP002045_1582 CDS_1802653-1801472 64.5 2.6e-18 2
CP002045_1352 CDS_1554448-1552784 53.8 2.9e-15 1
CP002045_0608 CDS_733616-732843 46.5 3.4e-13 1
CP002045_1076 CDS_1276422-1275622 45.7 5.6e-13 1
CP002045_1362 CDS_1565521-1564205 37.0 1.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002045_1546 1/1 254 320 .. 1 87 [] 80.0 1.1e-22
CP002045_1582 1/2 150 216 .. 1 87 [] 64.2 3.1e-18
CP002045_1352 1/1 297 364 .. 1 87 [] 53.8 2.9e-15
CP002045_0608 1/1 42 104 .. 7 87 .] 46.5 3.4e-13
CP002045_1076 1/1 43 111 .. 1 87 [] 45.7 5.6e-13
CP002045_1362 1/1 206 271 .. 1 87 [] 37.0 1.6e-10

Alignments of top-scoring domains:
CP002045_1546: domain 1 of 1, from 254 to 320: score 80.0, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPL+++rgyael ++ + ++eq+
CP002045_1 254 RMRRFVSDASHELRTPLATVRGYAELYRM---------GGVPAEQI- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i++e+ r+ +L++dlL l+r+++
CP002045_1 291 ----------PQAFTRIESESGRMANLVEDLLKLARLDER 320

CP002045_1582: domain 1 of 2, from 150 to 216: score 64.2, E = 3.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+r++ae++ + +e++
CP002045_1 150 TRRDFVANVSHELKTPVGAVRLLAETIHS---------VADEPEHV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ e+erl +L+ ++ +ls++++g
CP002045_1 187 ----------RHFSEKMMAESERLGNLVKEIIQLSQLQEG 216

CP002045_1352: domain 1 of 1, from 297 to 364: score 53.8, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELR P+t+Ir++ +l+ + +++el++
CP002045_1 297 IQTDFVSAVSHELRSPVTTIRMAGQLIYD-------KRDELPPAL-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + +++ l+++++dlL++sr +ag
CP002045_1 335 ----------KRSAELQHTQLRNLDAMLSDLLEISRYDAG 364

CP002045_0608: domain 1 of 1, from 42 to 104: score 46.5, E = 3.4e-13
*->anlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRle
a+lsHE+RTPLt+I+g+ae+L + + ++ s+ q
CP002045_0 42 AYLSHEIRTPLTVIKGAAEILTD------GDLGPISPAQ-------- 74

dpeyreyletilreaerllrLindlLdlsrieag<-*
r++leti + + +L +d+L l +e
CP002045_0 75 ----RQFLETIAENSATACALAEDFLVLFSMEKS 104

CP002045_1076: domain 1 of 1, from 43 to 111: score 45.7, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e a +sHE+RTPLt I g+aelL e+l ++l+e+q
CP002045_1 43 ARNERPAIISHEIRTPLTLINGAAELLAEGLA------GPLTEQQ-- 81

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ti + + + ++ +++L +r+ +
CP002045_1 82 ----------RTFVTTITENTTQVINIAENFLIDTRLKES 111

CP002045_1362: domain 1 of 1, from 206 to 271: score 37.0, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++H+LRTPLta+++ +e ++ + ++e
CP002045_1 206 AERQFAADAAHQLRTPLTALSMRIEEIQF---------LADDSEV-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++l++++rl+ + +l+ s + g
CP002045_1 242 ----------ATEAERALEQIDRLSGVVTELMRKSSTGVG 271


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 8 0|==
-13 21 1|*===
-12 60 39|======*===
-11 175 205|============================== *
-10 293 380|================================================= *
-9 339 393|========================================================= *
-8 301 294|================================================*==
-7 235 185|==============================*=========
-6 115 106|=================*==
-5 77 58|=========*===
-4 47 31|=====*==
-3 19 16|==*=
-2 12 8|=*
-1 12 4|*=
0 3 2|*
1 3 1|*
2 2 0|=
3 2 0|=
4 0 0|
> 5 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 71.8974
P(chi-square) = 1.905e-11

Total sequences searched: 1731

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: