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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Croceibacter atlanticus HTCC2559  

Data for CP002046  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002046.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002046_0298 CDS_385290-387731 84.5 8.6e-24 1
CP002046_0452 CDS_548350-546821 84.3 1e-23 1
CP002046_1547 CDS_1729090-1726898 70.5 8.2e-20 1
CP002046_1874 CDS_2078943-2080478 59.1 1.4e-16 1
CP002046_0357 CDS_447033-446113 55.0 2e-15 1
CP002046_2501 CDS_2742098-2738496 48.7 1.3e-13 1
CP002046_0730 CDS_839597-841009 46.9 3.9e-13 1
CP002046_0650 CDS_758203-756800 45.2 1.2e-12 1
CP002046_2280 CDS_2515539-2518397 37.9 1.4e-10 1
CP002046_1588 CDS_1767681-1766458 37.8 1.5e-10 1
CP002046_2662 CDS_2913361-2912267 37.3 2e-10 1
CP002046_1589 CDS_1769096-1767876 30.2 2.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002046_0298 1/1 320 385 .. 1 87 [] 84.5 8.6e-24
CP002046_0452 1/1 133 198 .. 1 87 [] 84.3 1e-23
CP002046_1547 1/1 323 388 .. 1 87 [] 70.5 8.2e-20
CP002046_1874 1/1 284 352 .. 1 87 [] 59.1 1.4e-16
CP002046_0357 1/1 66 133 .. 1 87 [] 55.0 2e-15
CP002046_2501 1/1 982 1050 .. 1 87 [] 48.7 1.3e-13
CP002046_0730 1/1 256 327 .. 1 87 [] 46.9 3.9e-13
CP002046_0650 1/1 237 298 .. 1 80 [. 45.2 1.2e-12
CP002046_2280 1/1 738 806 .. 1 87 [] 37.9 1.4e-10
CP002046_1588 1/1 181 249 .. 1 87 [] 37.8 1.5e-10
CP002046_2662 1/1 149 215 .. 1 87 [] 37.3 2e-10
CP002046_1589 1/1 181 249 .. 1 87 [] 30.2 2.2e-08

Alignments of top-scoring domains:
CP002046_0298: domain 1 of 1, from 320 to 385: score 84.5, E = 8.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sH+L+TPL++I gy++l+++ t+l+e+q
CP002046_0 320 SREQLISTVSHDLKTPLNTIVGYSDLIEN---------TDLTEKQ-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ i +++ + +L++dlLd+s++eag
CP002046_0 356 ----------LYYVNQITNSSLYVTKLVDDLLDFSKLEAG 385

CP002046_0452: domain 1 of 1, from 133 to 198: score 84.3, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan+sHE+RTPLtaI g++elL++ t+l+ eq
CP002046_0 133 FKNKFLANISHEIRTPLTAIVGFSELLKK---------TNLNFEQ-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i +++e+l + ind+Ld+++ie g
CP002046_0 169 ----------LGLLDVITNASEQLTATINDMLDIAKIELG 198

CP002046_1547: domain 1 of 1, from 323 to 388: score 70.5, E = 8.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fl+++ HELRTPL a+ g++ lLl ++ + eq
CP002046_1 323 AKAQFLSTITHELRTPLYAVTGLTNLLLG---------ENPTKEQ-- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++ ++++ll+Lin++Ldl ++ea+
CP002046_1 359 ----------KQHLNSLKFSGDYLLSLINNILDLNKLEAN 388

CP002046_1874: domain 1 of 1, from 284 to 352: score 59.1, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HE++TP+++ +++++ L++ ++ + ++e
CP002046_1 284 IKTDFINNMTHEFKTPIATTKLALDFLKN------PKAQSKPEIL-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++e er++++++++L++sr+e +
CP002046_1 323 ----------QRYLGMIREENERMNSQVENILQISRLEKN 352

CP002046_0357: domain 1 of 1, from 66 to 133: score 55.0, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ efl n+sHEL+TPL +++gy+ +Ll+ +++ +++++
CP002046_0 66 YRKEFLGNVSHELKTPLFTVQGYILTLLD---------GAMKDKTLR 103

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ + ++rl ++ dl ++++eag
CP002046_0 104 ----------KKYLNRAMKGVDRLIYIVKDLDMITKLEAG 133

CP002046_2501: domain 1 of 1, from 982 to 1050: score 48.7, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++ sH+L+ PL++Ir+ +e+L +++ ++ l ++
CP002046_2 982 DLEQFVSICSHDLKEPLATIRFGSEMLDKNF------SHQLESKG-- 1020

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i+++a rl ++in lL+ sri+++
CP002046_2 1021 ----------KEYIRYIHEAAGRLANQINALLEHSRIGQN 1050

CP002046_0730: domain 1 of 1, from 256 to 327: score 46.9, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ ++HE+++PLt +r+ ++ ++++d ++d+e + +
CP002046_0 256 AWREMAKQVAHEIKNPLTPMRLSVQSFQRKFD---PQDPEINHKV-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey +t++++++ ++++ + + ++++ a+
CP002046_0 298 ----------EEYSNTLIQQIDTMSSIASAFSNFAKMPAQ 327

CP002046_0650: domain 1 of 1, from 237 to 298: score 45.2, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HEL+TPL++++ ++++L +++ ++ + + +
CP002046_0 237 IKTDFINNITHELKTPLATLSIATKTLTNKF-------AKDNKDIA- 275

peLRledpeyreyletilreaerllrLindlLd<-*
++ ++ti r+ +rl++Li+++ d
CP002046_0 276 ----------KDSIDTINRQNKRLQNLIDQVVD 298

CP002046_2280: domain 1 of 1, from 738 to 806: score 37.9, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e + +sH+L+ PL +I+++++ ++e+ +l++
CP002046_2 738 ELQEYAHVVSHDLKSPLRSISALVSWIKEDNK------KNLDDNS-- 776

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++ +e ++ Li+d+L +s i++
CP002046_2 777 ----------LTNIHLIESTLEKMELLISDVLNYSSIDSD 806

CP002046_1588: domain 1 of 1, from 181 to 249: score 37.8, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef+a +sH+L+ P+++I+++a+++++++ t+l+ +
CP002046_1 181 MLSEFAAVASHDLKLPIASIITTADIIKTKYK------TKLGKDG-- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i++++ +++ i +Ld+ e+g
CP002046_1 220 ----------QDRLNLIKDCSFTINEYITGMLDMYTSEHG 249

CP002046_2662: domain 1 of 1, from 149 to 215: score 37.3, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +a+++HEL+TPL+ I+g++el+++e+ + ++
CP002046_2 149 ILGEITAGIAHELNTPLANILGFSELIKDEV--------KGNSNI-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i++ a ++ + lL +s +
CP002046_2 186 ----------AEDLDKIIKNAIFSREVVKKLLFFSCEMPQ 215

CP002046_1589: domain 1 of 1, from 181 to 249: score 30.2, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+a +sH+++ P+++I ++a++L++++ + l+e+
CP002046_1 181 LLSDFAAVASHDIKLPIASIVTTADILKTKYK------SVLDEDG-- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i++++ +++ i+ +L++ + g
CP002046_1 220 ----------LNRLSLIKECSFTINEYISGMLEMYTSDKG 249


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 4 0|=
-14 9 0|=
-13 48 2|*=====
-12 157 61|======*===========
-11 310 320|===================================*
-10 503 594|======================================================== *
-9 524 613|==========================================================*
-8 427 459|================================================ *
-7 293 289|================================*
-6 177 166|==================*=
-5 116 91|==========*==
-4 46 48|=====*
-3 35 25|==*=
-2 19 13|=*=
-1 10 7|*=
0 4 3|*
1 2 1|*
2 1 1|*
> 3 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 190.6957
P(chi-square) = 6.306e-35

Total sequences searched: 2702

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: