Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Croceibacter atlanticus HTCC2559  

Data for CP002046  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP002046.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002046_0291 CDS_377134-375128 46.4 1.5e-13 1
CP002046_2479 CDS_2718545-2720365 35.0 3.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002046_0291 1/1 482 536 .. 1 70 [] 46.4 1.5e-13
CP002046_2479 1/1 406 472 .. 1 70 [] 35.0 3.2e-10

Alignments of top-scoring domains:
CP002046_0291: domain 1 of 1, from 482 to 536: score 46.4, E = 1.5e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R ARELHDsvgQ L +++ q+ + d++ +
CP002046_0 482 ERTRVARELHDSVGQKLMLLTRQTKTFG-----DTP----------M 513

relarealaevRrllgdLRpaal<-*
+la+++l+e+R + ++L+p++l
CP002046_0 514 LTLANTTLEELRSISRGLHPSIL 536

CP002046_2479: domain 1 of 1, from 406 to 472: score 35.0, E = 3.2e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ +A +LHDsvg +L+ ++lq + +++ + + + +++ + +
CP002046_2 406 ERQKLAGDLHDSVGATLATARLQFSHLKK--H-KNSLDNLDDIFSNT 449

relarealaevRrllgdLRpaal<-*
+el+++a+ e+R++ + ++l
CP002046_2 450 EELLSQAYHEIRNMSHLKNSGVL 472


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 28 0|===
-13 153 0|=============
-12 173 30|==*============
-11 241 247|====================*
-10 651 574|===============================================*=======
-9 604 652|=================================================== *
-8 332 502|============================ *
-7 218 316|=================== *
-6 135 178|============ *
-5 93 95|=======*
-4 29 50|=== *
-3 17 25|==*
-2 12 13|=*
-1 3 6|*
0 7 3|*
1 1 1|*
2 0 0|
3 1 0|=
> 4 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 801.1694
P(chi-square) = 0

Total sequences searched: 2702

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: