Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Streptomyces bingchenggensis BCW-1  

Data for CP002047  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP002047.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002047_3960 CDS_5057293-5055824 104.0 5.3e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002047_3960 1/1 290 359 .. 1 76 [. 104.0 5.3e-29

Alignments of top-scoring domains:
CP002047_3960: domain 1 of 1, from 290 to 359: score 104.0, E = 5.3e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ ++ ++aL+E+++RV S
CP002047_3 290 EIHHRVKNNLQTVAALLRLQARRMDSDQG-----RDALNEAVRRVGS 331

mAliHEeLYksedldtvdfseYlekLten<-*
+A++HE L+++ d ++v+f+e +++++
CP002047_3 332 IAIVHETLSQNLD-EQVEFDEIADRVLAM 359


Histogram of all scores:
score obs exp (one = represents 47 sequences)
----- --- ---
-15 33 0|=
-14 76 0|==
-13 235 62|=*===
-12 748 658|=============*==
-11 2745 1832|======================================*====================
-10 2294 2371|================================================= *
-9 1404 2003|============================== *
-8 1161 1344|========================= *
-7 515 798|=========== *
-6 435 444|=========*
-5 174 239|==== *
-4 96 126|==*
-3 49 66|=*
-2 20 34|*
-1 17 18|*
0 10 9|*
1 4 4|*
2 3 2|*
3 1 1|*
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1282.8112
P(chi-square) = 0

Total sequences searched: 10022

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: