Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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7 projects found  

1 accessions found for Truepera radiovictrix DSM 17093  

Data for CP002049  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002049.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002049_1565 CDS_1708825-1707260 92.7 4.5e-26 1
CP002049_2887 CDS_3197653-3196514 88.9 5.4e-25 1
CP002049_2036 CDS_2234044-2232641 63.2 1.1e-17 1
CP002049_0221 CDS_261934-260762 53.5 5.7e-15 1
CP002049_2453 CDS_2718065-2716626 51.7 1.9e-14 1
CP002049_0873 CDS_948408-949382 48.8 1.3e-13 1
CP002049_2569 CDS_2834235-2835389 34.3 1.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002049_1565 1/1 284 350 .. 1 87 [] 92.7 4.5e-26
CP002049_2887 1/1 140 208 .. 1 87 [] 88.9 5.4e-25
CP002049_2036 1/1 246 308 .. 1 87 [] 63.2 1.1e-17
CP002049_0221 1/1 143 209 .. 1 87 [] 53.5 5.7e-15
CP002049_2453 1/1 250 314 .. 1 87 [] 51.7 1.9e-14
CP002049_0873 1/1 104 160 .. 1 78 [. 48.8 1.3e-13
CP002049_2569 1/1 148 216 .. 1 87 [] 34.3 1.7e-09

Alignments of top-scoring domains:
CP002049_1565: domain 1 of 1, from 284 to 350: score 92.7, E = 4.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTP+taI g+a+ Ll+ +t+ ++eq
CP002049_1 284 TQRRFTADASHELRTPVTAIAGHASYLLR--------RTNPTPEQ-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i++ea r+++L+ndlL+l+r++ag
CP002049_1 321 ----------EESLKIIRSEAARMSKLVNDLLELARADAG 350

CP002049_2887: domain 1 of 1, from 140 to 208: score 88.9, E = 5.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efl lsHELRTPLt+++gya++L + + ++l+++q
CP002049_2 140 VQREFLGILSHELRTPLTSVIGYAQVLGD------EIIGPLNDKQ-- 178

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y eti+ ++ +l rLi+dlLdlsr+eag
CP002049_2 179 ----------RAYAETIYTSGLQLMRLIDDLLDLSRLEAG 208

CP002049_2036: domain 1 of 1, from 246 to 308: score 63.2, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a +sHELRTPL+a++gy+e+L++ +++e
CP002049_2 246 SARRFAAQASHELRTPLAALSGYLEVLQR-----------RPDEP-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +lre r++ L++ lL+l+r+e
CP002049_2 280 -----------RALAGALREMARMRGLLDALLTLARLEGR 308

CP002049_0221: domain 1 of 1, from 143 to 209: score 53.5, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl ++sHE++TPL+++++++e l ls+ ++
CP002049_0 143 RQQNFLNAVSHEFKTPLSTLKLLLESVLY---------RSLSPAKQ- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle++ +e++rl++ +++L +r+e+
CP002049_0 180 ----------RDYLERMNSELRRLEATSEQVLAAARLEHA 209

CP002049_2453: domain 1 of 1, from 250 to 314: score 51.7, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ fla sHELRTPLt+++g+++ + +++
CP002049_2 250 AQRAFLAETSHELRTPLTSLQGFLDRSVR----------RAPPSV-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le ++r a++++rL+ dlL+l+r +
CP002049_2 285 ----------RAELEDAQRIARSMSRLVADLLQLTRGQLV 314

CP002049_0873: domain 1 of 1, from 104 to 160: score 48.8, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+la lsHELRTP taIr +e+L+ +l+eeqr
CP002049_0 104 SARELLAVLSHELRTPATAIRSSLEALRY----------PLPEEQR- 139

peLRledpeyreyletilreaerllrLindl<-*
+++l ++ e+erl rL++dl
CP002049_0 140 ----------ERFLAHAEAETERLVRLLDDL 160

CP002049_2569: domain 1 of 1, from 148 to 216: score 34.3, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++ +l H+L+ P+++++g++e +l+ l ++ ++ +
CP002049_2 148 VKDDLTHMLVHDLKSPIASVMGLLEHALDLL-------GTDDPLGL- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ ea++ll L ++Ld r+ g
CP002049_2 187 ----------SELLALARGEAQHLLTLAANILDVRRMKDG 216


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 18 2|*=
-12 109 67|======*====
-11 234 349|======================== *
-10 450 647|============================================= *
-9 584 668|==========================================================*
-8 539 500|=================================================*====
-7 421 315|===============================*===========
-6 246 181|==================*======
-5 155 99|=========*======
-4 76 53|=====*==
-3 44 28|==*==
-2 19 14|=*
-1 19 7|*=
0 6 4|*
1 4 2|*
2 2 1|*
3 2 0|=
4 1 0|=
> 5 9 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 262.8019
P(chi-square) = 0

Total sequences searched: 2945

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: