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1 accessions found for Methanococcus voltae A3  

Data for CP002057  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002057.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002057_0816 CDS_922030-923994 79.2 1.8e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002057_0816 1/1 408 476 .. 1 87 [] 79.2 1.8e-22

Alignments of top-scoring domains:
CP002057_0816: domain 1 of 1, from 408 to 476: score 79.2, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+++a +sHELRTPLt+++gy+el l++ +e +e q
CP002057_0 408 LKSDLIAIASHELRTPLTSVKGYVELVLDGTM------GEVNEAQ-- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ + ++rl+rLi+ +Ldls+ie g
CP002057_0 447 ----------SKCLSIANDNIDRLRRLIDSMLDLSKIERG 476


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 12 0|==
-13 41 1|*======
-12 112 39|======*============
-11 219 203|=================================*===
-10 341 377|========================================================= *
-9 316 389|===================================================== *
-8 259 291|============================================ *
-7 163 183|============================ *
-6 106 105|=================*
-5 55 58|=========*
-4 37 31|=====*=
-3 21 16|==*=
-2 20 8|=*==
-1 6 4|*
0 1 2|*
1 3 1|*
2 0 0|
3 1 0|=
4 0 0|
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 177.3517
P(chi-square) = 8.306e-33

Total sequences searched: 1717

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: