Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

3 accessions found for 'Nostoc azollae' 0708  

Data for CP002060  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002060.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002060_0038 CDS_72804-71470 66.8 1.8e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002060_0038 1/1 219 285 .. 1 87 [] 66.8 1.8e-20

Alignments of top-scoring domains:
CP002060_0038: domain 1 of 1, from 219 to 285: score 66.8, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HE+RTPL+a+ ++e++ + + ++ +
CP002060_0 219 QMQQFTADAAHEFRTPLAAMYSTIEAAIK---------LQQKPKSN- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l++++r+ +rl++L+ dlL l+ri+++
CP002060_0 256 ----------REILDVLKRQNRRLSQLVGDLLLLTRIDQE 285


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 8 1|*=======
-11 8 6|=====*==
-10 8 11|======== *
-9 7 11|======= *
-8 5 8|===== *
-7 4 5|====*
-6 3 3|==*
-5 1 1|*
-4 2 0|==
-3 0 0|
> -2 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 4.9206
P(chi-square) = 0.1777

Total sequences searched: 51

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: