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7 accessions found for Halalkalicoccus jeotgali B3  

Data for CP002062  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002062.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002062_1316 CDS_1234616-1231074 65.0 3.4e-18 1
CP002062_0315 CDS_305434-308016 61.9 2.5e-17 1
CP002062_2464 CDS_2291295-2292434 47.3 3.5e-13 1
CP002062_1530 CDS_1430653-1428809 46.7 5.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002062_1316 1/1 966 1028 .. 1 87 [] 65.0 3.4e-18
CP002062_0315 1/1 630 698 .. 1 87 [] 61.9 2.5e-17
CP002062_2464 1/1 153 221 .. 1 87 [] 47.3 3.5e-13
CP002062_1530 1/1 396 457 .. 1 87 [] 46.7 5.2e-13

Alignments of top-scoring domains:
CP002062_1316: domain 1 of 1, from 966 to 1028: score 65.0, E = 3.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sH+LR+PLt+ +gy+e+L +eeq
CP002062_1 966 RLEGFASLISHDLRNPLTVASGYLEVLDV------------PEEQ-- 998

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +++++ +r++r+i+d+L+l+r +
CP002062_1 999 ----------REFLGKVQSAHDRMERIIEDVLTLARQGKA 1028

CP002062_0315: domain 1 of 1, from 630 to 698: score 61.9, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL Ir y++l++++++ + l+e+
CP002062_0 630 ELERFAYVASHDLKEPLRMIRSYLDLIQRRYE------GSLDEDA-- 668

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + aer++r+i+dlL++sri++
CP002062_0 669 ----------DEFITYAVDGAERMRRMIDDLLTYSRIGTD 698

CP002062_2464: domain 1 of 1, from 153 to 221: score 47.3, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y+ lL+++ ++l+ee
CP002062_2 153 RLERFAYAASHDLQEPLRMVSSYLRLLERRCG------SDLNEEG-- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le++ + ++r+ ++++ lL +sr +g
CP002062_2 192 ----------RECLEIAVDGSDRMIAMVDGLLRYSRVTTG 221

CP002062_1530: domain 1 of 1, from 396 to 457: score 46.7, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+LR+PL++ g+++l+ e + + ++
CP002062_1 396 RLEEFVGVVSHDLRNPLNVAEGALSLATE----------TGDLDH-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le + r+ +r++++i+ lL l+r +
CP002062_1 431 -------------LEQVNRSHRRIREIIEGLLVLAREGRA 457


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 6 0|=
-14 25 0|===
-13 71 2|*======
-12 182 69|======*==========
-11 341 359|=============================== *
-10 533 667|================================================= *
-9 593 689|====================================================== *
-8 479 516|============================================ *
-7 357 325|=============================*===
-6 182 187|================*
-5 111 102|=========*=
-4 73 54|====*==
-3 34 29|==*=
-2 14 15|=*
-1 13 7|*=
0 6 4|*
1 2 2|*
2 2 1|*
> 3 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 241.0243
P(chi-square) = 5.305e-315

Total sequences searched: 3035

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: