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2 accessions found for Methanohalobium evestigatum Z-7303  

Data for CP002069  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002069.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002069_1113 CDS_1135825-1132835 98.6 7e-28 1
CP002069_1103 CDS_1117066-1119309 97.0 2e-27 1
CP002069_1454 CDS_1539743-1542298 92.8 3.1e-26 1
CP002069_1043 CDS_1050331-1049219 92.7 3.4e-26 1
CP002069_0366 CDS_368527-371040 87.8 7.9e-25 1
CP002069_1502 CDS_1599843-1597579 75.1 3.2e-21 1
CP002069_1089 CDS_1099774-1096460 63.0 8.9e-18 2
CP002069_1104 CDS_1119377-1121410 61.4 2.5e-17 1
CP002069_1832 CDS_1949485-1951269 38.0 1e-10 1
CP002069_0361 CDS_362688-361189 32.2 4.7e-09 1
CP002069_0364 CDS_367115-366015 29.2 3.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002069_1113 1/1 772 840 .. 1 87 [] 98.6 7e-28
CP002069_1103 1/1 508 576 .. 1 87 [] 97.0 2e-27
CP002069_1454 1/1 626 694 .. 1 87 [] 92.8 3.1e-26
CP002069_1043 1/1 138 206 .. 1 87 [] 92.7 3.4e-26
CP002069_0366 1/1 612 680 .. 1 87 [] 87.8 7.9e-25
CP002069_1502 1/1 527 595 .. 1 87 [] 75.1 3.2e-21
CP002069_1089 2/2 871 939 .. 1 87 [] 62.4 1.3e-17
CP002069_1104 1/1 452 520 .. 1 87 [] 61.4 2.5e-17
CP002069_1832 1/1 375 440 .. 1 87 [] 38.0 1e-10
CP002069_0361 1/1 280 345 .. 1 87 [] 32.2 4.7e-09
CP002069_0364 1/1 148 211 .. 1 85 [. 29.2 3.2e-08

Alignments of top-scoring domains:
CP002069_1113: domain 1 of 1, from 772 to 840: score 98.6, E = 7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akse+lan+sHELRTPLt+I+g++++Ll+ ++ ++l+e q
CP002069_1 772 AKSELLANVSHELRTPLTSIIGFSDILLK------GKLGDLNESQ-- 810

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++++r++++ll+Li d+Ldls+ie+g
CP002069_1 811 ----------KTYLSKVHRSGKHLLDLITDILDLSKIESG 840

CP002069_1103: domain 1 of 1, from 508 to 576: score 97.0, E = 2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+++an+sHELRTPLt+I+g++++Ll+ ++ ++l++ q
CP002069_1 508 AKSDMIANVSHELRTPLTTIIGFSDVLLK------GKAGDLNDSQ-- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i++ +++l ++in++Ldls+i++g
CP002069_1 547 ----------EKYLSKIHDRGQQLHNIINEMLDLSKIDSG 576

CP002069_1454: domain 1 of 1, from 626 to 694: score 92.8, E = 3.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL++I+g++el+l+ +++el+e q
CP002069_1 626 TKNEFLANVSHELRTPLNSIIGFSELMLT------ERRGELNEYQ-- 664

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ +++++ +ll+Lin +Ld+s+ieag
CP002069_1 665 ----------KHYLNNVKNSGYHLLSLINKILDISKIEAG 694

CP002069_1043: domain 1 of 1, from 138 to 206: score 92.7, E = 3.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akse+lan+sHELRTPLt+I+g+++++l+ ++ ++l+ q+
CP002069_1 138 AKSELLANVSHELRTPLTSIIGFSDIMLK------GKAGKLNNNQI- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i+++++ ll+LindlLdls+ie+g
CP002069_1 178 -----------NYLNKIHKSGQNLLDLINDLLDLSKIESG 206

CP002069_0366: domain 1 of 1, from 612 to 680: score 87.8, E = 7.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ lan+ HELRTPLt+I+g++++Ll+ ++ ++l+e q
CP002069_0 612 AKSDILANVNHELRTPLTSIIGFSDVLLK------GKAGDLNESQ-- 650

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+++++ +++ll+Li d+Ldls+ie+g
CP002069_0 651 ----------KMYLSRVHNNGKHLLDLITDILDLSKIESG 680

CP002069_1502: domain 1 of 1, from 527 to 595: score 75.1, E = 3.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl+n+sHEL+TPLt+I+gy+ ++ ee ++l++eq
CP002069_1 527 MKDEFLSNVSHELKTPLTSIKGYSNIIYEET------LGKLNDEQ-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ti r +erl+rL++ l +s +ag
CP002069_1 566 ----------KKTMNTIVRNSERLRRLVDSLIYMSMSQAG 595

CP002069_1089: domain 2 of 2, from 871 to 939: score 62.4, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++nlsHELRTP+t+I+g++el+ + + ++l+e+q
CP002069_1 871 MKDEFISNLSHELRTPITSIKGFSELIYN------EKLGTLNEKQ-- 909

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i ++ +rl+ Li+ lL +++++
CP002069_1 910 ----------KEGMDSIVKSCDRLRWLIESLLYVNKLQTE 939

CP002069_1104: domain 1 of 1, from 452 to 520: score 61.4, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++n+sHELRTP+t I+gy+ lL + + +el+++q
CP002069_1 452 MKNRFISNVSHELRTPITNIKGYSNLLNN------KKLGELNDKQ-- 490

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i ++ erl+ Li+ l + +e+
CP002069_1 491 ----------SKAVSVISQSCERLRWLIDTLIHINILESD 520

CP002069_1832: domain 1 of 1, from 375 to 440: score 38.0, E = 1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+ l+H+L +P+t+I+gy+++Ll+ e +e+++
CP002069_1 375 LKDLFTDILRHDLLNPVTVIKGYSDVLLK---------MEDDEKKI- 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ leti+r ++ l ++i++ l+++ +
CP002069_1 412 -----------KTLETIKRNTNKLINMIENASKLTKLNTV 440

CP002069_0361: domain 1 of 1, from 280 to 345: score 32.2, E = 4.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+ ++H+L +P + I+gya+lL + e + ++
CP002069_0 280 FKDTFTDIIRHDLLNPASIISGYAKLLIN---------KESDTSKI- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i+++ + + +L+++ +++++e+
CP002069_0 317 -----------QMLKKIQSSNDKIIELLENASEFAKLENT 345

CP002069_0364: domain 1 of 1, from 148 to 211: score 29.2, E = 3.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f l+H+L++P+ +g+ae+L + e ++++
CP002069_0 148 TREMFSDILRHDLKNPVGISKGFAEILYK---------NETDPKK-- 183

peLRledpeyreyletilreaerllrLindlLdlsrie<-*
e++e+i++ +r +Li+ dl+r e
CP002069_0 184 ----------LEIIEKIINNNNRAIDLIEKAGDLARVE 211


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 4 0|=
-14 10 0|==
-13 49 1|*======
-12 150 49|======*===============
-11 314 254|====================================*========
-10 385 472|======================================================= *
-9 376 487|====================================================== *
-8 320 365|============================================== *
-7 201 230|============================= *
-6 138 132|==================*=
-5 69 72|==========*
-4 60 38|=====*===
-3 22 20|==*=
-2 15 10|=*=
-1 5 5|*
0 4 2|*
1 3 1|*
2 4 0|=
3 2 0|=
> 4 17 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 286.0267
P(chi-square) = 0

Total sequences searched: 2148

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: