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2 accessions found for Methanohalobium evestigatum Z-7303  

Data for CP002070  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002070.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002070_0005 CDS_9406-12393 99.3 2.3e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002070_0005 1/1 764 832 .. 1 87 [] 99.3 2.3e-29

Alignments of top-scoring domains:
CP002070_0005: domain 1 of 1, from 764 to 832: score 99.3, E = 2.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akse+lan+sHELRTPLt+I+g+++++l+ + ++l++ q
CP002070_0 764 AKSELLANVSHELRTPLTSIIGFSDVILK------RKVGDLNDNQ-- 802

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i++++++ll+Lind+Ldl++ie+g
CP002070_0 803 ----------TRYLDKIHKSGQHLLDLINDILDLAKIESG 832


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 7 2|=*=====
-11 21 12|===========*=========
-10 19 23|=================== *
-9 22 24|====================== *
-8 12 18|============ *
-7 16 11|==========*=====
-6 4 6|==== *
-5 3 3|==*
> -4 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 10.5460
P(chi-square) = 0.03217

Total sequences searched: 106

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: