Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Acinetobacter sp. DR1  

Data for CP002080  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002080.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002080_3301 CDS_3531379-3534186 93.6 3.3e-26 1
CP002080_2331 CDS_2515154-2511693 77.8 1e-21 1
CP002080_0102 CDS_117257-115899 72.9 2.4e-20 1
CP002080_1282 CDS_1408652-1411306 63.4 1.2e-17 1
CP002080_1112 CDS_1226712-1228052 62.5 2.2e-17 1
CP002080_3172 CDS_3391714-3390065 61.6 3.8e-17 1
CP002080_1197 CDS_1317090-1318493 59.3 1.7e-16 1
CP002080_0560 CDS_597935-599599 56.7 9.4e-16 1
CP002080_0175 CDS_200516-197019 54.3 4.7e-15 1
CP002080_1205 CDS_1325409-1326737 51.6 2.6e-14 1
CP002080_3625 CDS_3884658-3886226 51.0 3.9e-14 1
CP002080_0687 CDS_740858-742192 47.7 3.4e-13 1
CP002080_0260 CDS_285150-283693 47.0 5.3e-13 1
CP002080_0537 CDS_571172-572443 41.8 1.6e-11 1
CP002080_1875 CDS_2023354-2022284 38.1 1.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002080_3301 1/1 289 355 .. 1 87 [] 93.6 3.3e-26
CP002080_2331 1/1 683 749 .. 1 87 [] 77.8 1e-21
CP002080_0102 1/1 224 290 .. 1 87 [] 72.9 2.4e-20
CP002080_1282 1/1 656 724 .. 1 87 [] 63.4 1.2e-17
CP002080_1112 1/1 224 290 .. 1 87 [] 62.5 2.2e-17
CP002080_3172 1/1 314 379 .. 1 87 [] 61.6 3.8e-17
CP002080_1197 1/1 236 302 .. 1 87 [] 59.3 1.7e-16
CP002080_0560 1/1 334 398 .. 1 87 [] 56.7 9.4e-16
CP002080_0175 1/1 804 869 .. 1 87 [] 54.3 4.7e-15
CP002080_1205 1/1 222 284 .. 1 87 [] 51.6 2.6e-14
CP002080_3625 1/1 313 377 .. 1 87 [] 51.0 3.9e-14
CP002080_0687 1/1 218 280 .. 1 87 [] 47.7 3.4e-13
CP002080_0260 1/1 260 318 .. 1 87 [] 47.0 5.3e-13
CP002080_0537 1/1 178 246 .. 1 87 [] 41.8 1.6e-11
CP002080_1875 1/1 138 202 .. 1 87 [] 38.1 1.7e-10

Alignments of top-scoring domains:
CP002080_3301: domain 1 of 1, from 289 to 355: score 93.6, E = 3.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g+++lLl+ ++l+ eq
CP002080_3 289 AKSVFLANISHELRTPLNSIDGFIHLLLR--------QQNLNNEQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti++++ +ll+Lind+Ld+s+i+ag
CP002080_3 326 ----------NLYLQTIRKSSAHLLALINDVLDFSKIDAG 355

CP002080_2331: domain 1 of 1, from 683 to 749: score 77.8, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gy++lL++ +e+ +eq
CP002080_2 683 AKSRYVIGISHELRTPLNSILGYSQLLQK---------QEQLSEQG- 719

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i r++++l +Li+ lLdl+rie+g
CP002080_2 720 ----------KMALGVISRSGQHLTSLIDGLLDLARIETG 749

CP002080_0102: domain 1 of 1, from 224 to 290: score 72.9, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHELRTPLt+++gy+e+ + +e ++
CP002080_0 224 MRKDFVDNISHELRTPLTVLSGYIETFTD---------QEDISPR-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ ++++++r+++L+ndlL ls +e++
CP002080_0 260 ---------WKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

CP002080_1282: domain 1 of 1, from 656 to 724: score 63.4, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++I+g+a++L +++se+++
CP002080_1 656 LRSALLSSVSHDLRSPLASIIGAADTLAH-------FKADMSEQDQ- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++leti+ e+erl+r i++lLd++r++++
CP002080_1 695 ----------QDLLETIHLEGERLDRYIQNLLDMTRLGHE 724

CP002080_1112: domain 1 of 1, from 224 to 290: score 62.5, E = 2.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHELR PL+aI++ +++L++++ q+
CP002080_1 224 AEQRFTADASHELRSPLSAIQMRLQVLQRKY-------------QHV 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
peL ++ +e+i++++ r + +++lL l+r+e +
CP002080_1 258 PEL-------HQDFERIQEDVSRSTKVLENLLLLARLEPN 290

CP002080_3172: domain 1 of 1, from 314 to 379: score 61.6, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++++sHELRTP++ Ir+ +e+L e e + +r
CP002080_3 314 AQRELMRAVSHELRTPVARIRFGTEMLAE----------EDDYNHR- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++++e l+ Li+++++++++e+g
CP002080_3 350 ----------MHQVDMIDKDIEALNTLIDEIMTYAKLEQG 379

CP002080_1197: domain 1 of 1, from 236 to 302: score 59.3, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f +++HE+RTPL+ ++g +e++l+ +++s eq
CP002080_1 236 QLNRFSEDIAHEFRTPLNNLIGQTEIALT---------GDRSVEQ-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l + l++ +rl r+i+ +L l+r+++
CP002080_1 272 ---------YEDLLVSHLEDYHRLKRMIDSMLFLARADQK 302

CP002080_0560: domain 1 of 1, from 334 to 398: score 56.7, E = 9.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sHEL+TPL+++++ +e+++++ ++++e+
CP002080_0 334 SRRQWVADTSHELKTPLAVLQAQIEAMQDGI-------RKATPEH-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + r++ +l +L +dl dl++++a+
CP002080_0 372 -------------LDAMMRQVSSLKKLTQDLADLAQADAQ 398

CP002080_0175: domain 1 of 1, from 804 to 869: score 54.3, E = 4.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +P++a r+++ +L+ + ++ee+
CP002080_0 804 SKSRFIAAASHDLLQPMHAARLFSTVLEQ---------SIATEED-- 839

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++r++ +++++ lLd++r+e g
CP002080_0 840 ----------RQTLQQLDRALYGAESMLSALLDIARLEGG 869

CP002080_1205: domain 1 of 1, from 222 to 284: score 51.6, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+ ++sHELRTPLt ++g+++l+++++ +e
CP002080_1 222 REREFTGDVSHELRTPLTILKGNVQLCQAKY-------GE------- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++++ +e ++ L++ lL ++r
CP002080_1 255 ----------DKALVRLHNTIEDMQLLVDTLLAIARNTVK 284

CP002080_3625: domain 1 of 1, from 313 to 377: score 51.0, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI + elL++ + eq+
CP002080_3 313 ALGQLSASIAHEIRNPLAAIVQANELLKD-----------SDLEQQ- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i ++++r++++++d L l+ e
CP002080_3 348 ----------NTLRRMIGKQTKRIDSIVQDTLGLASSERT 377

CP002080_0687: domain 1 of 1, from 218 to 280: score 47.7, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTP+ta+ + +++L l+e
CP002080_0 218 EQKQFIADAAHELRTPVTALNLQTKILIS----------QLPE---- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + + + r+++L+ +lL l++ +
CP002080_0 251 ----------HESLQNLSKGLARIQHLVTQLLALAKQDVS 280

CP002080_0260: domain 1 of 1, from 260 to 318: score 47.0, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt Ir++ae+L +
CP002080_0 260 ERRIMLAGISHDLRTPLTRIRLTAEMLPD------------------ 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e + +++ +++++n++ + r ++
CP002080_0 289 ----------EFLREGLVYDVDDMDAILNQFISYMRDGSD 318

CP002080_0537: domain 1 of 1, from 178 to 246: score 41.8, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sH+LR P ++++g++e+L + ++++l+e +
CP002080_0 178 SKTKFFSIISHDLRAPFHGLLGFSEVLAK-------ERETLDESSI- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ +++ +L++ lL+ + +e g
CP002080_0 217 ----------QNIADYLYDTSQSTYNLLESLLTWAMAEGG 246

CP002080_1875: domain 1 of 1, from 138 to 202: score 38.1, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a+++HELRTP+t ++g ++ + + + ++++l
CP002080_1 138 NAQVWNAAIAHELRTPITILQGRLQGIID---------GVFKPDEIL 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l+++e l++L++dl+++s e++
CP002080_1 176 -------------FKSLLNQVEGLSHLVEDLRTISLVENQ 202


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 13 0|=
-13 63 2|*====
-12 220 88|======*=========
-11 392 459|============================ *
-10 697 851|================================================== *
-9 786 879|========================================================= *
-8 606 658|============================================ *
-7 401 415|=============================*
-6 283 238|================*====
-5 160 131|=========*==
-4 118 70|====*====
-3 49 37|==*=
-2 30 19|=*=
-1 20 10|*=
0 10 5|*
1 3 2|*
2 3 1|*
3 0 0|
4 2 0|=
5 0 0|
> 6 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 318.3644
P(chi-square) = 0

Total sequences searched: 3874

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: