Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Hyphomicrobium denitrificans ATCC 51888  

Data for CP002083  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002083.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002083_1405 CDS_1477379-1474734 102.7 7.8e-29 2
CP002083_3435 CDS_3544648-3546603 93.8 2.7e-26 1
CP002083_1837 CDS_1892683-1894344 91.0 1.7e-25 1
CP002083_0298 CDS_310845-309559 86.3 3.6e-24 1
CP002083_2275 CDS_2356244-2358754 82.5 4.2e-23 1
CP002083_0276 CDS_291341-290457 81.6 7.7e-23 1
CP002083_1741 CDS_1798309-1796465 81.1 1.1e-22 1
CP002083_1349 CDS_1418693-1413000 78.1 7.5e-22 1
CP002083_2269 CDS_2349531-2351369 61.5 3.8e-17 1
CP002083_2901 CDS_3029121-3031841 58.7 2.3e-16 1
CP002083_0586 CDS_624206-626098 52.9 1e-14 1
CP002083_3090 CDS_3187154-3188518 50.4 5.4e-14 1
CP002083_3397 CDS_3499453-3501873 49.7 8.3e-14 1
CP002083_1663 CDS_1715167-1716330 47.3 3.9e-13 1
CP002083_1665 CDS_1718013-1720373 47.1 4.5e-13 1
CP002083_1121 CDS_1182507-1183970 45.8 1.1e-12 1
CP002083_1126 CDS_1189764-1188742 45.6 1.2e-12 1
CP002083_2098 CDS_2184032-2181426 44.3 2.8e-12 1
CP002083_0012 CDS_15162-16565 39.8 5.2e-11 1
CP002083_0717 CDS_753949-751448 37.6 2.2e-10 1
CP002083_3482 CDS_3598558-3597386 37.3 2.8e-10 1
CP002083_2467 CDS_2555847-2557262 37.2 2.9e-10 1
CP002083_0903 CDS_961865-960225 36.4 5e-10 1
CP002083_1287 CDS_1329229-1327961 31.1 1.5e-08 1
CP002083_0347 CDS_357379-358776 30.8 1.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002083_3435 1/1 241 306 .. 1 87 [] 93.8 2.7e-26
CP002083_1837 1/1 278 347 .. 1 87 [] 91.0 1.7e-25
CP002083_0298 1/1 198 265 .. 1 87 [] 86.3 3.6e-24
CP002083_2275 1/1 594 662 .. 1 87 [] 82.5 4.2e-23
CP002083_0276 1/1 48 117 .. 1 87 [] 81.6 7.7e-23
CP002083_1741 1/1 230 296 .. 1 87 [] 81.1 1.1e-22
CP002083_1349 1/1 1229 1297 .. 1 87 [] 78.1 7.5e-22
CP002083_1405 1/2 206 273 .. 1 87 [] 74.4 8.5e-21
CP002083_2269 1/1 369 434 .. 1 87 [] 61.5 3.8e-17
CP002083_2901 1/1 667 735 .. 1 87 [] 58.7 2.3e-16
CP002083_0586 1/1 259 324 .. 1 87 [] 52.9 1e-14
CP002083_3090 1/1 93 158 .. 1 87 [] 50.4 5.4e-14
CP002083_3397 1/1 429 494 .. 1 87 [] 49.7 8.3e-14
CP002083_1663 1/1 148 212 .. 1 87 [] 47.3 3.9e-13
CP002083_1665 1/1 532 603 .. 1 87 [] 47.1 4.5e-13
CP002083_1121 1/1 242 308 .. 1 87 [] 45.8 1.1e-12
CP002083_1126 1/1 123 192 .. 1 87 [] 45.6 1.2e-12
CP002083_2098 1/1 488 554 .. 1 87 [] 44.3 2.8e-12
CP002083_0012 1/1 219 282 .. 1 87 [] 39.8 5.2e-11
CP002083_0717 1/1 601 671 .. 1 87 [] 37.6 2.2e-10
CP002083_3482 1/1 165 231 .. 4 87 .] 37.3 2.8e-10
CP002083_2467 1/1 265 323 .. 1 87 [] 37.2 2.9e-10
CP002083_0903 1/1 318 388 .. 1 87 [] 36.4 5e-10
CP002083_1287 1/1 192 261 .. 1 87 [] 31.1 1.5e-08
CP002083_0347 1/1 238 304 .. 1 87 [] 30.8 1.9e-08
CP002083_1405 2/2 647 715 .. 1 87 [] 28.4 9.2e-08

Alignments of top-scoring domains:
CP002083_3435: domain 1 of 1, from 241 to 306: score 93.8, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g+++l+++ t l++eq
CP002083_3 241 AKSRFLATMSHEIRTPMNGILGMISLMRD---------TQLDAEQ-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++++ ll+L++d+Ld+s+ieag
CP002083_3 277 ----------RTCARIVEDSTRALLNLVDDILDFSKIEAG 306

CP002083_1837: domain 1 of 1, from 278 to 347: score 91.0, E = 1.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++++ + ++ ++++
CP002083_1 278 AKSRFLATMSHELRTPLNAIMGFSEVMEK------EILGPIGSDT-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey + i++++++ll +in++Ldlsrieag
CP002083_1 317 ---------YREYAHNIYESGNHLLCIINEILDLSRIEAG 347

CP002083_0298: domain 1 of 1, from 198 to 265: score 86.3, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+++rg++e+L+ +++++e +
CP002083_0 198 MRTDFVANASHELRTPLASVRGFIETLQG---------PARNDEVAH 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ ++aer+ rLi+dlL lsr e+
CP002083_0 236 ----------DRFLKIMAEQAERMTRLIDDLLLLSRVEEK 265

CP002083_2275: domain 1 of 1, from 594 to 662: score 82.5, E = 4.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+ ++s ELRTPL++I+g++e+L l+ ++l+++q
CP002083_2 594 LKTNFIGHISYELRTPLNSIIGFSEMLASPLF------GDLNAKQ-- 632

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl i ++++ ll++ind+Ldl+ i+ag
CP002083_2 633 ----------REYLADIMSSSKTLLAIINDILDLATIDAG 662

CP002083_0276: domain 1 of 1, from 48 to 117: score 81.6, E = 7.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHEL+TPL++++g+++lL +++ l+++++
CP002083_0 48 VKSEFIANMSHELKTPLNTVIGFSKLLTQ------HQERRLPDKEI- 87

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey i ++a +ll+ ind+Ld+s++++g
CP002083_0 88 ----------VEYATLINDAAGHLLSVINDILDISKLQSG 117

CP002083_1741: domain 1 of 1, from 230 to 296: score 81.1, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+a++sHE+RTPL++I+gy++l l+ ++ ls e+
CP002083_1 230 AKSEFFATMSHEIRTPLNSIIGYTSLVLA--------RQGLSRED-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++++++ ll+++nd+Ld+s ieag
CP002083_1 267 ----------TNDLSIVRDAGKALLAIVNDILDFSAIEAG 296

CP002083_1349: domain 1 of 1, from 1229 to 1297: score 78.1, E = 7.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L + d +lse q
CP002083_1 1229 YKSEFLANMSHELRTPLNSILILGQQLSD------NPDRNLSERQ-- 1267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
CP002083_1 1268 ----------VEFARTIHGAGTDLLNLISDILDLSKIESG 1297

CP002083_1405: domain 1 of 2, from 206 to 273: score 74.4, E = 8.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHELRTPLt I++ +e L+ ++ + l+++
CP002083_1 206 LKSQFFANVSHELRTPLTLILAPVEKLKSDV-------ASLGAPA-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i++ a rllrL+nd+L l r+e+g
CP002083_1 244 ----------AELLEVIENNALRLLRLVNDILGLIRLEEG 273

CP002083_2269: domain 1 of 1, from 369 to 434: score 61.5, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL++PL+a r +ae++ ++ +++
CP002083_2 369 GSERFAADVAHELKNPLAAARSTAEAMAY---------AKTDADR-- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ i++e++rl+rLind+ sr++a+
CP002083_2 405 ----------MELVTEIQSELKRLNRLINDISSTSRLDAE 434

CP002083_2901: domain 1 of 1, from 667 to 735: score 58.7, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL++I+g a L+ +gd + +
CP002083_2 667 LRGVLLSSISHDLRTPLASILGSATSLRQ------LGDRMRKQDR-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ti++ea rl++ +++lLd+++ e+g
CP002083_2 706 ----------ADLLATIEEEATRLSSFVSNLLDMTKVETG 735

CP002083_0586: domain 1 of 1, from 259 to 324: score 52.9, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt I+g++elL+ t ++++
CP002083_0 259 AVGQLTGGIAHDFNNLLTIISGNLELLEG---------TIENPDD-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+++ r+a++ rL ++lL+++r ++
CP002083_0 295 ----------RELLSRAMRAADSGARLTRRLLTFARRRQL 324

CP002083_3090: domain 1 of 1, from 93 to 158: score 50.4, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++ H+L +PL+a r++++ L + ++se+++
CP002083_3 93 FKTRFFTAVGHDLLQPLHAARLTLSELMD----------TQSEPDH- 128

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i +++ +++L+ +Ld+s++eag
CP002083_3 129 ----------KQLTNNISSALVTIEELLTSILDISKLEAG 158

CP002083_3397: domain 1 of 1, from 429 to 494: score 49.7, E = 8.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+PL a+ ++a +L + +s e
CP002083_3 429 AKSRFLAAASHDLRQPLYALTLFARALSR---------RVQSGEA-- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ ++ l + + lL sr++a
CP002083_3 465 ----------TTLVAQMEEGLHGLKGMFDALLNVSRLDAK 494

CP002083_1663: domain 1 of 1, from 148 to 212: score 47.3, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s ++ l+HE+++PL++Irg+a+lL+ ls+e+
CP002083_1 148 SVSGMAGVLAHEIKNPLSGIRGAAQLLEP----------GLSDED-- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ L++++ + +
CP002083_1 183 ----------RALTQLICSETDRICTLVDRMEVFGDERPL 212

CP002083_1665: domain 1 of 1, from 532 to 603: score 47.1, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ g + + ++
CP002083_1 532 AWADVARRIAHEIKNPLTPIQLSAERLRRKF-----GKQVSEDREL- 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ti+r+++++ ++++++ ++r+ ++
CP002083_1 573 ---------FETLTQTIERQTDHIKSMVDEFASFARMPQP 603

CP002083_1121: domain 1 of 1, from 242 to 308: score 45.8, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e n++H+L+TP++ +r ae++l+ +++++e
CP002083_1 242 GLREVSDNIAHDLKTPINRLRNSAEAALR---------DPRGAEA-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le+ ++ ++ l + n lL ++r+eag
CP002083_1 278 ---------YREGLERTIEKSDELIKTFNALLLIARLEAG 308

CP002083_1126: domain 1 of 1, from 123 to 192: score 45.6, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++a++sHELRTPL+a++g++el+ +e++ ++l++
CP002083_1 123 AWAKLTAHMSHELRTPLNAVLGFSELMSKEVF------GPLGSSA-- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y + i+ +++ ll+ +d L ++ + +
CP002083_1 162 ---------YGDYARDIHASGRVLLKSAEDALAITALLTA 192

CP002083_2098: domain 1 of 1, from 488 to 554: score 44.3, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ LtaI+g+++lLl t+++++
CP002083_2 488 AVGNLAGGIAHDFNNVLTAIIGFSDLLLQ---------THRPSDPS- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+++a+r +L+ lL +sr +++
CP002083_2 525 ----------YKDIKNIQSAANRAANLVAGLLGFSRKQTQ 554

CP002083_0012: domain 1 of 1, from 219 to 282: score 39.8, E = 5.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I + a+ L+ el++e r
CP002083_0 219 ALDGLAAAAAHELGTPLSTITLVAKELEH----------ELGPESR- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re l+ ++++a+r++++++ l +r +
CP002083_0 255 ---------FREDLQLLHSQAKRCREILQKL---TRKPGE 282

CP002083_0717: domain 1 of 1, from 601 to 671: score 37.6, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++l+HEL++PL aI++ya+++ +++ +agd+ l + q+
CP002083_0 601 TLGGMVSGLAHELNQPLCAIMTYAQTCVRKM---QAGDARLEDLQHG 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i r+a+r +++ +++ +s+ +
CP002083_0 645 -------------LDQIVRQAQRADEIFMRIRNFSKKSQI 671

CP002083_3482: domain 1 of 1, from 165 to 231: score 37.3, E = 2.8e-10
*->eflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeL
+ la l+HEL+TPLtaI ++ae++++ + ++++
CP002083_3 165 DQLAKLAHELKTPLTAIAAAAEVMRD------ERLGAMGNAR----- 200

RledpeyreyletilreaerllrLindlLdlsrieag<-*
y y i++ a + l+ i lL sr +
CP002083_3 201 ------YLNYAADIHENATHALDVITSLLSESRRQGT 231

CP002083_2467: domain 1 of 1, from 265 to 323: score 37.2, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + lL++ ++e+
CP002083_2 265 QRTTMLAGVSHDLRTVLTRFKLELALLED------------TPET-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ ++++++d L +s+ + g
CP002083_2 298 --------------RALSTDVNEMQHMLEDYLAFSKGDGG 323

CP002083_0903: domain 1 of 1, from 318 to 388: score 36.4, E = 5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ se + +++HE+++PLtaI+ ya l +e+l +++e r+
CP002083_0 318 SASEVTTAIAHEINQPLTAISSYARLVQEYL--------TKGEGNRA 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ +++ ++++r + +++l+d+ r++
CP002083_0 357 IAI--------EAASKMASQVDRTAAVVRNLRDFIRLGRR 388

CP002083_1287: domain 1 of 1, from 192 to 261: score 31.1, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +l+HEL++PL+aI y+ +l +l+ + +s+e
CP002083_1 192 SMGQMATALAHELNQPLAAIANYSRGCLYRLE-----NGSKSAEL-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e + ++aer ++i ++ + ++
CP002083_1 232 ----------KRAMEHVCSQAERAGDIIASIRRFLSKGNV 261

CP002083_0347: domain 1 of 1, from 238 to 304: score 30.8, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +++H+LRTP++ +r +e+++ ++ +
CP002083_0 238 NLKQVSMDIAHDLRTPIARMRQKLEIAQW---------SPHDLAG-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e + + +e++ +++ + lL +s ie+g
CP002083_0 274 ---------YQEVVGAAVQEIDEISETFDALLRISEIESG 304

CP002083_1405: domain 2 of 2, from 647 to 715: score 28.4, E = 9.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+l HE+ +PL+ + ++++l+ + t ++++++
CP002083_1 647 ALGTMAAGLLHEIGNPLNFMGTALQLAAR-------DPTIQGDPDT- 685

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ +r+ r + dl+ ++ + +
CP002083_1 686 ----------ADTMKDIQAGYDRIHRVVTDLRGFTAPQKP 715


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 3 0|=
-14 15 0|==
-13 51 2|*====
-12 184 80|======*=========
-11 354 416|============================== *
-10 585 772|================================================= *
-9 691 797|==========================================================*
-8 603 597|=================================================*=
-7 449 376|===============================*======
-6 233 216|=================*==
-5 141 118|=========*==
-4 63 63|=====*
-3 37 33|==*=
-2 27 17|=*=
-1 26 9|*==
0 7 4|*
1 7 2|*
2 2 1|*
3 1 0|=
4 2 0|=
5 2 0|=
6 0 0|
> 7 29 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 258.4717
P(chi-square) = 0

Total sequences searched: 3512

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: