Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

1 accessions found for Dehalogenimonas lykanthroporepellens BL-DC-9  

Data for CP002084  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002084.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002084_1264 CDS_1294293-1295624 80.1 9.6e-23 1
CP002084_1144 CDS_1168207-1169952 75.6 1.8e-21 1
CP002084_0939 CDS_976206-974047 74.4 3.9e-21 1
CP002084_0129 CDS_135280-133574 71.8 2.2e-20 1
CP002084_1093 CDS_1118566-1115117 70.1 6.4e-20 1
CP002084_0276 CDS_279191-280711 69.8 7.9e-20 1
CP002084_0251 CDS_257502-256063 69.7 8.4e-20 1
CP002084_0047 CDS_47545-49491 67.7 3.2e-19 1
CP002084_0474 CDS_469584-470690 62.9 7.2e-18 1
CP002084_0882 CDS_908201-910117 59.1 8.3e-17 1
CP002084_0884 CDS_912944-910773 58.8 1e-16 1
CP002084_1488 CDS_1519976-1518621 56.3 5.3e-16 1
CP002084_1494 CDS_1526318-1524966 56.3 5.3e-16 1
CP002084_0959 CDS_995713-996936 51.9 9.2e-15 1
CP002084_0827 CDS_844093-844989 50.7 2.1e-14 1
CP002084_0456 CDS_453786-452419 48.4 9e-14 1
CP002084_1106 CDS_1131991-1130450 46.2 3.7e-13 1
CP002084_0847 CDS_868507-866567 38.5 6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002084_1264 1/1 222 289 .. 1 87 [] 80.1 9.6e-23
CP002084_1144 1/1 359 426 .. 1 87 [] 75.6 1.8e-21
CP002084_0939 1/1 350 416 .. 1 87 [] 74.4 3.9e-21
CP002084_0129 1/1 341 406 .. 1 87 [] 71.8 2.2e-20
CP002084_1093 1/1 792 858 .. 1 87 [] 70.1 6.4e-20
CP002084_0276 1/1 279 344 .. 1 87 [] 69.8 7.9e-20
CP002084_0251 1/1 250 314 .. 1 87 [] 69.7 8.4e-20
CP002084_0047 1/1 284 350 .. 1 87 [] 67.7 3.2e-19
CP002084_0474 1/1 143 209 .. 1 87 [] 62.9 7.2e-18
CP002084_0882 1/1 402 467 .. 1 87 [] 59.1 8.3e-17
CP002084_0884 1/1 503 569 .. 1 87 [] 58.8 1e-16
CP002084_1488 1/1 229 295 .. 1 87 [] 56.3 5.3e-16
CP002084_1494 1/1 228 294 .. 1 87 [] 56.3 5.3e-16
CP002084_0959 1/1 181 246 .. 1 87 [] 51.9 9.2e-15
CP002084_0827 1/1 69 134 .. 1 87 [] 50.7 2.1e-14
CP002084_0456 1/1 235 301 .. 1 87 [] 48.4 9e-14
CP002084_1106 1/1 298 362 .. 1 87 [] 46.2 3.7e-13
CP002084_0847 1/1 414 479 .. 1 87 [] 38.5 6e-11

Alignments of top-scoring domains:
CP002084_1264: domain 1 of 1, from 222 to 289: score 80.1, E = 9.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTP+++++++ae+L+e +++ +++++
CP002084_1 222 VRRDFVANISHELRTPIASLKLLAETLKE---------GAMADQEVA 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i ea+ + +L+++l +lsrie+g
CP002084_1 260 ----------ADFLNRISVEADKMGQLVDELGELSRIESG 289

CP002084_1144: domain 1 of 1, from 359 to 426: score 75.6, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e++ n+sHELRTP+t+I++++e+L + ++ ++++++
CP002084_1 359 MRKELVGNISHELRTPITGIKAMVETLHD---------GAIDDKEAA 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i++e++rl + +++l +lsrie+g
CP002084_1 397 ----------KDFLTRIESEVDRLAQTVSELTELSRIETG 426

CP002084_0939: domain 1 of 1, from 350 to 416: score 74.4, E = 3.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+++HE+++PLt+I+g++elL e +el+e
CP002084_0 350 VVGEMAAGIAHEINNPLTGIIGFSELLME--------QSELPENV-- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i re++r+ ++++++L+++r a+
CP002084_0 387 ----------RENVVIISRESQRIKDIVRRMLTFARQSAP 416

CP002084_0129: domain 1 of 1, from 341 to 406: score 71.8, E = 2.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a+++HE+++PLt+I+g++elL e +l+e
CP002084_0 341 SVGELAAGIAHEINNPLTGILGFSELLME---------NNLPENL-- 376

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +eti++ea+r +i +lL ++r ++
CP002084_0 377 ----------RADVETIHSEANRAAGIIKNLLVFARQHHQ 406

CP002084_1093: domain 1 of 1, from 792 to 858: score 70.1, E = 6.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elL + +++ +++
CP002084_1 792 AVGEMAAGIAHEINNPLTGVIGFSELLMT--------RPDVPDDM-- 828

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i + ++r ++++++L+++r +
CP002084_1 829 ----------KEDLHIINEGSQRVKDIVRRMLTFARQSKP 858

CP002084_0276: domain 1 of 1, from 279 to 344: score 69.8, E = 7.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a+++HE+++PLt+I+g++e L + ++++
CP002084_0 279 SVGELAAGVAHEINNPLTGIIGFSERLMR---------KCRDDKM-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+r + +++lL+++r +++
CP002084_0 315 ----------TTDLKRIHSEAQRAAKVVQNLLTFARQREP 344

CP002084_0251: domain 1 of 1, from 250 to 314: score 69.7, E = 8.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++la+++HELRTPLt+I g+++++ + + l+ ++
CP002084_0 250 SRKRLLADVAHELRTPLTVINGTVDAMMD---------GVLPTDE-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ti++e+ l rLi dl+dls +eag
CP002084_0 286 -----------QQLGTIKEESLLLTRLIADLRDLSLAEAG 314

CP002084_0047: domain 1 of 1, from 284 to 350: score 67.7, E = 3.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elLle + +l+++
CP002084_0 284 AVGEMAAGIAHEINNPLTGVIGFSELLLE--------RKDLPDDM-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +i ++r +++ ++L+++r +
CP002084_0 321 ----------KEELTIINAGSQRVKEIVKRMLTFARQHEL 350

CP002084_0474: domain 1 of 1, from 143 to 209: score 62.9, E = 7.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++l+HE ++PLt+I+g+++lLl+ d+ ++e
CP002084_0 143 SLGEMASGLAHEVNNPLTGIMGFTQLLLT--------DPRMPEAL-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le + ea+r ++++ lL ++r +a
CP002084_0 180 ----------KGDLELVNGEAHRAAEIVRKLLNFARGGAK 209

CP002084_0882: domain 1 of 1, from 402 to 467: score 59.1, E = 8.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++l HEL+TPLt +++++e L+ +l+++++
CP002084_0 402 ERQLFTRGLVHELKTPLTPLITASEYLEQ----------HLTDKTA- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i+ a+ +++ +n++Ldl++ e g
CP002084_0 438 ----------REFARNIRTGAHNMEKRVNEMLDLAKGEIG 467

CP002084_0884: domain 1 of 1, from 503 to 569: score 58.8, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++++HE+++PLt+++g+++lL +++l+e+
CP002084_0 503 SIGVMASGIAHEINNPLTGVIGFSQLLAQ--------RPDLPEDI-- 539

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +i++ a+r +i++lL+++ + +
CP002084_0 540 ----------RDDAAIIDSGAQRVAGIIRRLLTFADPRPP 569

CP002084_1488: domain 1 of 1, from 229 to 295: score 56.3, E = 5.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sH+L PLt+I++ ++l+l+ e+++e+
CP002084_1 229 RQYRFTANASHDLTSPLTVIKAETDLALM---------KERNSEE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l ++ ++ r++ +++dlL+l+ ++ag
CP002084_1 265 ---------YRQALTVVSGQVGRMRLIVEDLLTLAGLDAG 295

CP002084_1494: domain 1 of 1, from 228 to 294: score 56.3, E = 5.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sH+L PLt+I++ ++l+l+ e+++e+
CP002084_1 228 RQYRFTANASHDLTSPLTVIKAETDLALM---------KERNSEE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l ++ ++ r++ +++dlL+l+ ++ag
CP002084_1 264 ---------YRQALTVVSGQVGRMRLIVEDLLTLAGLDAG 294

CP002084_0959: domain 1 of 1, from 181 to 246: score 51.9, E = 9.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++l HEL+TPLt +++ e+Ll+ l e
CP002084_0 181 KRIDFTRSLVHELKTPLTPMIASGEVLLD----------ILEGENE- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+r a l+r indlLd++r e g
CP002084_0 217 ----------LRLAGNIYRGAINLERRINDLLDFARGEMG 246

CP002084_0827: domain 1 of 1, from 69 to 134: score 50.7, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef ++l HEL+TPLtaI++ +el + el + r
CP002084_0 69 RRAEFNRALVHELKTPLTAILASTELFVD----------ELKNDRR- 104

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+++a+ l+r ++lLd sr e g
CP002084_0 105 ----------LPLAQNIYQAAKNLDRRTDELLDVSRGEIG 134

CP002084_0456: domain 1 of 1, from 235 to 301: score 48.4, E = 9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++ H+LR PL+ I++ ++l+le +++ +
CP002084_0 235 RQRQFTEDATHDLRAPLSNIKAQTSLALE---------RDRPWKY-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l +i++++e+++++++dlL+l+ ++
CP002084_0 271 ---------YREALVSIEEDTEQMESMVEDLLTLASTDTV 301

CP002084_1106: domain 1 of 1, from 298 to 362: score 46.2, E = 3.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef ++l HEL+TPLt I+++ae+L +++ e+
CP002084_1 298 EQTEFYRALVHELKTPLTPIMLTAEALSDRV-----------EPR-- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e i r a+ l+++indl dl r e g
CP002084_1 332 ---------FKPQMEGIVRGARLLEDIINDLHDLIRSEVG 362

CP002084_0847: domain 1 of 1, from 414 to 479: score 38.5, E = 6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +l H+L+TPLt ++g++e+L l+e
CP002084_0 414 QRRMFTHALVHDLKTPLTPLLGASEALVQ----------GLTEAP-- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ e ++ a l+r +++l dl++ + g
CP002084_0 449 ---------WNRMAENVHMGAVNLNRTVSQLFDLEKGQMG 479


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 7 0|==
-13 38 1|*=======
-12 95 37|=======*===========
-11 166 196|================================== *
-10 279 364|======================================================== *
-9 291 376|==========================================================*
-8 283 282|========================================================*
-7 202 177|===================================*=====
-6 113 102|====================*==
-5 61 56|===========*=
-4 46 30|=====*====
-3 26 15|==*===
-2 12 8|=*=
-1 12 4|*==
0 4 2|*
1 2 1|*
2 2 0|=
3 0 0|
> 4 19 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 151.8538
P(chi-square) = 1.549e-27

Total sequences searched: 1659

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: