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Classification of phyla is from NCBI page
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3 accessions found for Nitrosococcus watsoni C-113  

Data for CP002086  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002086.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002086_1095 CDS_1236960-1241462 95.8 6e-27 1
CP002086_0681 CDS_741941-743254 85.5 5e-24 1
CP002086_1279 CDS_1485327-1483162 66.2 1.4e-18 1
CP002086_1410 CDS_1645022-1646524 64.8 3.5e-18 1
CP002086_0641 CDS_708512-707013 57.8 3.4e-16 1
CP002086_1432 CDS_1676756-1680457 54.7 2.6e-15 1
CP002086_2795 CDS_3262550-3264751 54.7 2.6e-15 2
CP002086_1334 CDS_1557250-1556135 48.9 1.2e-13 1
CP002086_2154 CDS_2529406-2527931 48.6 1.4e-13 1
CP002086_1337 CDS_1560681-1559020 37.5 1.9e-10 1
CP002086_1709 CDS_2042688-2043911 35.0 9.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002086_1095 1/1 272 337 .. 1 87 [] 95.8 6e-27
CP002086_0681 1/1 200 267 .. 1 87 [] 85.5 5e-24
CP002086_1279 1/1 504 572 .. 1 87 [] 66.2 1.4e-18
CP002086_1410 1/1 269 334 .. 1 87 [] 64.8 3.5e-18
CP002086_0641 1/1 276 344 .. 1 87 [] 57.8 3.4e-16
CP002086_1432 1/1 860 928 .. 1 87 [] 54.7 2.6e-15
CP002086_2795 1/2 498 570 .. 1 87 [] 53.7 4.8e-15
CP002086_1334 1/1 143 211 .. 1 87 [] 48.9 1.2e-13
CP002086_2154 1/1 262 330 .. 1 87 [] 48.6 1.4e-13
CP002086_1337 1/1 321 391 .. 1 87 [] 37.5 1.9e-10
CP002086_1709 1/1 172 238 .. 1 87 [] 35.0 9.9e-10

Alignments of top-scoring domains:
CP002086_1095: domain 1 of 1, from 272 to 337: score 95.8, E = 6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a++sHELRTPL++++g++elL + tel++ q
CP002086_1 272 IKGEFAASVSHELRTPLNGVIGMLELLSN---------TELTPNQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++++ ++e ll+Li ++Ld+srie+g
CP002086_1 308 ----------REYVQVACGSGETLLDLIGNILDFSRIESG 337

CP002086_0681: domain 1 of 1, from 200 to 267: score 85.5, E = 5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt++rgy+e+L++ + + ++e
CP002086_0 200 MRRDFIASVSHELRTPLTVLRGYLEVLEK--------RKNVGSES-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++t+ +++ r+++L++dlL lsr+e+
CP002086_0 237 ---------WNRSFKTMGEQVGRMQHLVEDLLMLSRLESR 267

CP002086_1279: domain 1 of 1, from 504 to 572: score 66.2, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I g++++Lle+++ ++l+ e
CP002086_1 504 ELEAFSYSVSHDLRAPLRSIDGFSQALLEDYE------DKLDREG-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++++ +++r+ rLi+dlL+lsri
CP002086_1 543 ----------QGYLQRVRAATQRMGRLIDDLLQLSRISRV 572

CP002086_1410: domain 1 of 1, from 269 to 334: score 64.8, E = 3.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HELR+PL++I++ ++ L++ + +++q
CP002086_1 269 AVGELAASIAHELRNPLAGILMSCSNLRK---------EISNPDQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i e++rl rL+n+lLd ++ +
CP002086_1 305 ----------AQRLDLIGAELKRLTRLLNNLLDQAKHTPQ 334

CP002086_0641: domain 1 of 1, from 276 to 344: score 57.8, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+LR PL +I g+a +L+ + t + eq+
CP002086_0 276 ELERFIYTVSHDLRSPLITIHGFAGMLKQSF-------TQHNQEQI- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +i+ +a ++ L++dlL+lsri+
CP002086_0 315 ----------LEDIGRIQAAAAKMQLLLDDLLELSRIGRL 344

CP002086_1432: domain 1 of 1, from 860 to 928: score 54.7, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+ l HELR+PL++I ++e+L+ ++ + ++e +
CP002086_1 860 QKNQFLSLLGHELRNPLAVIYNTTEVLKHNV-------NTTTPELI- 898

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i ++++llrL++dlL l+ri ++
CP002086_1 899 ----------ASKVKLIACQVKHLLRLVDDLLNLTRIHNN 928

CP002086_2795: domain 1 of 2, from 498 to 570: score 53.7, E = 4.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L++++ l+++q++
CP002086_2 498 AWGEVARRLAHEIKNPLTPIQLSAERLRRKY------LKCLPADQIQ 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p ++++ti+ ++e + +++n + +++r a
CP002086_2 539 PL--------DRLTHTIIAQVEAMKEMVNAFSEYARNPAL 570

CP002086_1334: domain 1 of 1, from 143 to 211: score 48.9, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL ++ ya+lL +++ + l+++
CP002086_1 143 ELEQFAYVASHDLQEPLRMVSSYAQLLARRY------RNQLDSDA-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + + a r+++LindlL +sr ++
CP002086_1 182 ----------DEFIEFMVDGATRMQALINDLLAYSRVGTK 211

CP002086_2154: domain 1 of 1, from 262 to 330: score 48.6, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl+++sHEL+TPL+a+r +elL + ++ ++ls++q
CP002086_2 262 TKIKFLRHVSHELKTPLAALREGSELLCD------QIIGHLSAQQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++++ + rl++Li+d+L + ++++
CP002086_2 301 ----------LEVARILRSNSLRLQKLIEDMLRFNLAGTN 330

CP002086_1337: domain 1 of 1, from 321 to 391: score 37.5, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HEL++PL aI +y++++l+ l+ + ++ q l
CP002086_1 321 TLGEMAAQIAHELNQPLGAITTYSDICLRALE------AQAPKYQPL 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le i +aer ++i+ l+dl ++
CP002086_1 362 ----------RDILEEIATQAERGGKIIRHLRDLIHKKEQ 391

CP002086_1709: domain 1 of 1, from 172 to 238: score 35.0, E = 9.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+ ++H++R L+aI g++ +L t+ + e
CP002086_1 172 ARGKLLREAAHDIRGGLSAIEGASAILNI---------TKNPHES-- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le++ +++ ++++ lL+lsr+e+g
CP002086_1 208 ---------FTHILEILNAGINSVKEMLDSLLELSRLESG 238


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 10 0|==
-13 46 2|*=====
-12 142 65|=======*========
-11 292 339|================================= *
-10 428 629|================================================ *
-9 527 649|==========================================================*
-8 444 486|================================================== *
-7 372 306|=================================*========
-6 236 176|===================*=======
-5 166 96|==========*========
-4 90 51|=====*====
-3 49 27|==*===
-2 17 14|=*
-1 9 7|*
0 6 3|*
1 6 2|*
2 4 1|*
3 0 0|
4 1 0|=
5 0 0|
6 0 0|
> 7 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 317.1483
P(chi-square) = 0

Total sequences searched: 2861

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: