hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP002086.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002086_0956 CDS_1074497-1073142 55.1 4.2e-16 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002086_0956 1/1 252 321 .. 1 70 [] 55.1 4.2e-16
Alignments of top-scoring domains:
CP002086_0956: domain 1 of 1, from 252 to 321: score 55.1, E = 4.2e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ERaRIAR+LHD+v +L++ik ++e+++ +l +++++ + +l+
CP002086_0 252 ERARIARDLHDGVMNMLAGIKFMIEAILIRL--SNNDQstSIHMTLE 296
eirelarealaevRrllgdLRpaal<-*
+ + ++++lae+Rr+++dL+p al
CP002086_0 297 DLPTKLKDTLAELRRIVRDLHPIAL 321
Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 28 0|====
-13 51 0|======
-12 95 31|===*=======
-11 141 262|================ *
-10 424 608|================================================ *
-9 473 690|===================================================== *
-8 436 532|================================================= *
-7 355 334|=====================================*==
-6 284 189|====================*===========
-5 222 101|===========*=============
-4 127 53|=====*=========
-3 85 27|==*=======
-2 50 13|=*====
-1 37 7|*====
0 17 3|*=
1 16 1|*=
2 6 0|=
3 4 0|=
4 4 0|=
5 3 0|=
6 1 0|=
> 7 2 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 957.8981
P(chi-square) = 0
Total sequences searched: 2861
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
