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Classification of phyla is from NCBI page
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3 accessions found for Photobacterium profundum SS9  

Data for CR354531  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR354531.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR354531_1188 CDS_1391445-1394396 95.1 1.1e-26 1
CR354531_2945 CDS_3524233-3526944 93.2 3.9e-26 1
CR354531_1776 CDS_2110524-2108443 86.8 2.5e-24 1
CR354531_0680 CDS_798638-799942 78.2 6.9e-22 1
CR354531_0494 CDS_560176-556781 76.6 2e-21 1
CR354531_0513 CDS_589541-591877 70.0 1.4e-19 1
CR354531_3310 CDS_3950150-3951223 62.3 2.1e-17 1
CR354531_0943 CDS_1089055-1090407 60.9 5.5e-17 1
CR354531_1836 CDS_2174991-2172946 55.0 2.5e-15 1
CR354531_0876 CDS_1017834-1018919 53.6 6.2e-15 1
CR354531_0214 CDS_238387-237020 53.1 8.6e-15 1
CR354531_0956 CDS_1108684-1107317 49.3 1.1e-13 1
CR354531_3228 CDS_3849266-3845802 47.3 3.8e-13 1
CR354531_0651 CDS_757277-759340 44.4 2.6e-12 1
CR354531_0169 CDS_188679-190010 44.3 2.7e-12 1
CR354531_2687 CDS_3213772-3216132 37.5 2.3e-10 1
CR354531_2119 CDS_2504268-2502823 37.1 3.1e-10 1
CR354531_1168 CDS_1362760-1360826 32.2 7.3e-09 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR354531_1188 1/1 469 534 .. 1 87 [] 95.1 1.1e-26
CR354531_2945 1/1 265 330 .. 1 87 [] 93.2 3.9e-26
CR354531_1776 1/1 330 395 .. 1 87 [] 86.8 2.5e-24
CR354531_0680 1/1 205 272 .. 1 87 [] 78.2 6.9e-22
CR354531_0494 1/1 459 527 .. 1 87 [] 76.6 2e-21
CR354531_0513 1/1 262 327 .. 1 87 [] 70.0 1.4e-19
CR354531_3310 1/1 137 202 .. 1 87 [] 62.3 2.1e-17
CR354531_0943 1/1 228 294 .. 1 87 [] 60.9 5.5e-17
CR354531_1836 1/1 446 513 .. 1 87 [] 55.0 2.5e-15
CR354531_0876 1/1 117 183 .. 1 87 [] 53.6 6.2e-15
CR354531_0214 1/1 237 299 .. 1 87 [] 53.1 8.6e-15
CR354531_0956 1/1 232 298 .. 1 87 [] 49.3 1.1e-13
CR354531_3228 1/1 790 855 .. 1 87 [] 47.3 3.8e-13
CR354531_0651 1/1 263 329 .. 1 87 [] 44.4 2.6e-12
CR354531_0169 1/1 232 292 .. 1 87 [] 44.3 2.7e-12
CR354531_2687 1/1 564 632 .. 1 87 [] 37.5 2.3e-10
CR354531_2119 1/1 261 319 .. 1 87 [] 37.1 3.1e-10

Alignments of top-scoring domains:
CR354531_1188: domain 1 of 1, from 469 to 534: score 95.1, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++I+g+a+lL + t l+ +q
CR354531_1 469 AKSAFLATMSHEIRTPMNGILGTASLLGD---------TGLNQQQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i r++e ll+++nd+Ld+s+ieag
CR354531_1 505 ----------ARYLNVINRSGETLLDILNDILDYSKIEAG 534

CR354531_2945: domain 1 of 1, from 265 to 330: score 93.2, E = 3.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t ls+ q
CR354531_2 265 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TRLSSSQ-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ti+++a+ ll +ind+Ld+s++eag
CR354531_2 301 ----------HDYLLTIEKSANNLLTIINDILDFSKLEAG 330

CR354531_1776: domain 1 of 1, from 330 to 395: score 86.8, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL+a++g+ ++L + + l+ +q
CR354531_1 330 AKSEFLAMMSHEIRTPLNAVLGLMDTLVD---------SGLDKKQ-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++++a+ ll +ind+Ldlsrie+g
CR354531_1 366 ----------MEWVSQMEQSAQLLLTIINDILDLSRIESG 395

CR354531_0680: domain 1 of 1, from 205 to 272: score 78.2, E = 6.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +e+ +
CR354531_0 205 MRRNFFANVSHELRTPMTVLQGYLEMSKD---------PEMLAGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ +++ r+++L+++lL+ls+iea
CR354531_0 241 --------MWGKAHGVMTEQLVRMNSLVEQLLTLSKIEAA 272

CR354531_0494: domain 1 of 1, from 459 to 527: score 76.6, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae Ll++++ ++ q
CR354531_0 459 LKDEFLATTSHELRTPLHGMVGIAESLLAGAN------GPVQKSQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le i+++++rl +L++dlLd+ +++ g
CR354531_0 498 ----------RRQLEMIINSGQRLTNLVDDLLDYHKMRYG 527

CR354531_0513: domain 1 of 1, from 262 to 327: score 70.0, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Lle t+l++eq
CR354531_0 262 DKTAFISTISHELRTPLNGIVGLSRMLLE---------TPLNDEQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +t++ +a l ++ nd+ d+ + +
CR354531_0 298 ----------RGYMRTVHVSAITLGNIFNDIIDMDKSDRR 327

CR354531_3310: domain 1 of 1, from 137 to 202: score 62.3, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e++++l+HE+++PL ++rg+a+lL++ +l+++
CR354531_3 137 AAKELVRGLAHEIKNPLGGLRGAAQLLEK----------TLPDPC-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey++ i+++a+rl++L+++lL r + +
CR354531_3 172 ---------YTEYTQMIIEQADRLRNLVDRLLGPQRPGLQ 202

CR354531_0943: domain 1 of 1, from 228 to 294: score 60.9, E = 5.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++++HELRTPL+ I++ +++l ++s e+
CR354531_0 228 RLSEFSSDIAHELRTPLSNISTQNQVILS---------MPRSKEE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e + + l+e++r+ + ind+L ++++e+
CR354531_0 264 ---------YQETIASNLEELNRIIKTINDVLYIAKAENS 294

CR354531_1836: domain 1 of 1, from 446 to 513: score 55.0, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++elL+ el ++ +
CR354531_1 446 ALGELTAGIAHEINNPTAVILGNVELLQLEL-------GDDTQRV-- 483

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i+++++r++++ + lL++sr +
CR354531_1 484 ----------KEELDAIHEQIDRIRNITRSLLQYSRQGGV 513

CR354531_0876: domain 1 of 1, from 117 to 183: score 53.6, E = 6.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya L ++l++++r
CR354531_0 117 SLGKMVASLAHQVRTPLSSAMLYAANLSS---------PNLNPQTR- 153

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + ++ l++++nd+L +++ + +
CR354531_0 154 ----------DRFQTKLVDRLHDLEKQVNDMLLFAKGGDN 183

CR354531_0214: domain 1 of 1, from 237 to 299: score 53.1, E = 8.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r++ l+++ +++
CR354531_0 237 GQQRLLSDISHELRSPLTRLRMANALAKR---------KQGESKE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ eaerl+++i++lL+lsr++ +
CR354531_0 273 -------------LTRIDTEAERLEKMISELLELSRMQVN 299

CR354531_0956: domain 1 of 1, from 232 to 298: score 49.3, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f +l+HELRTPL+aI++ ++Ll e++ ++
CR354531_0 232 QLSFFSTHLAHELRTPLSAIILQNQVLLQ---------NERDIKT-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l++ l+e+e l++ + d+L l++++++
CR354531_0 268 ---------YQDALRSNLEELEFLSKTVTDILLLTKAQSN 298

CR354531_3228: domain 1 of 1, from 790 to 855: score 47.3, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++++ L e ++ +e++
CR354531_3 790 SKSRFLAAVSHDLMQPLNAARLFSSSLSE---------LAKEDETI- 826

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++++ ++Li dlLd sr+eag
CR354531_3 827 -----------KLSRHIESALGAAEDLIGDLLDVSRLEAG 855

CR354531_0651: domain 1 of 1, from 263 to 329: score 44.4, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +l++l HE+RTP++a++gya +L + ++++ qr
CR354531_0 263 SKFALLSTLNHEIRTPINAVLGYANMLNN---------MACDDAQR- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+i+ +a+ l++ ++ L+++++ +g
CR354531_0 300 ----------QNTVEKIIWSANLLNSVAQNTLTYTKASSG 329

CR354531_0169: domain 1 of 1, from 232 to 292: score 44.3, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt Ir+++e++ e+
CR354531_0 232 DRALLLAGVSHDLRTPLTRIRLATEMMSP--------------ED-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e ++++i++++d+ +
CR354531_0 263 ----------SYLADGMTKDTEECNEIISQFMDYLKSTKK 292

CR354531_2687: domain 1 of 1, from 564 to 632: score 37.5, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HEL++PL+aI++y+ ++++ + ++
CR354531_2 564 VVGQTMTSLAHELNQPLSAISTYVFTAKM-------------AVEKE 597

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++Rl l++i++ + r+ r+i l+ +sr ++
CR354531_2 598 NYARL-----PASLDKIDNLTARMGRIIASLRSFSRKQSA 632

CR354531_2119: domain 1 of 1, from 261 to 319: score 37.1, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t++r+ +e ++
CR354531_2 261 DRTKMLAAISHDLRTPITSMRLRLEFIEH------------------ 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +l+ + ++ +i+ + ++r +a+
CR354531_2 290 ----------NEDQKQLLKTLTNMELMIEATMNFARDDAQ 319


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 6 0|=
-13 38 2|*===
-12 173 78|=======*========
-11 358 404|================================= *
-10 568 751|==================================================== *
-9 623 775|========================================================= *
-8 576 580|====================================================*
-7 431 366|=================================*======
-6 266 210|===================*=====
-5 137 115|==========*==
-4 88 61|=====*==
-3 47 32|==*==
-2 31 17|=*=
-1 23 8|*==
0 15 4|*=
1 11 2|*
2 3 1|*
3 2 0|=
> 4 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 276.2661
P(chi-square) = 0

Total sequences searched: 3416

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: