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Classification of phyla is from NCBI page
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3 accessions found for Photobacterium profundum SS9  

Data for CR354531  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CR354531.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR354531_0808 CDS_939896-938199 67.2 1.4e-19 1
CR354531_2276 CDS_2705268-2703673 53.2 1.8e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR354531_0808 1/1 365 435 .. 1 70 [] 67.2 1.4e-19
CR354531_2276 1/1 331 396 .. 1 70 [] 53.2 1.8e-15

Alignments of top-scoring domains:
CR354531_0808: domain 1 of 1, from 365 to 435: score 67.2, E = 1.4e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ERa IARELHDs++QsLs +k+q+ l++r+l +kd++ + ++
CR354531_0 365 ERATIARELHDSLAQSLSYLKIQMTLLKRQLK-EKDNGcdNTNNIVT 410

eirelarealaevRrllgdLRpaal<-*
i ++ a++++R+ll+++R ++
CR354531_0 411 DIDSGLSGAYTQLRELLSTFRLTIK 435

CR354531_2276: domain 1 of 1, from 331 to 396: score 53.2, E = 1.8e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ IARELHD++gQ+++ai+ q++ ++r ++ ++ + + +i
CR354531_2 331 VRRDIARELHDEIGQNITAIRTQASILKR----VENTPMGESCASTI 373

relarealaevRrllgdLRpaal<-*
+ l+ ++ + ll++LRp +l
CR354531_2 374 ESLSLNIYDTTKGLLTQLRPKTL 396


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 10 0|=
-13 99 0|========
-12 183 38|==*============
-11 216 313|================= *
-10 656 726|=================================================== *
-9 730 824|========================================================= *
-8 469 635|===================================== *
-7 369 399|============================= *
-6 283 226|=================*====
-5 169 121|=========*===
-4 104 63|====*===
-3 38 32|==*
-2 39 16|=*=
-1 29 8|*==
0 8 4|*
1 5 2|*
2 3 1|*
3 0 0|
4 2 0|=
5 0 0|
6 0 0|
7 1 0|=
> 8 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 783.5217
P(chi-square) = 0

Total sequences searched: 3416

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: