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3 accessions found for Photobacterium profundum SS9  

Data for CR354532  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR354532.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR354532_1150 CDS_1300368-1298632 106.8 3.2e-30 2
CR354532_0538 CDS_626221-628263 97.5 1.3e-27 2
CR354532_0060 CDS_76025-73110 92.3 3.9e-26 1
CR354532_0026 CDS_34174-37281 85.1 4.5e-24 1
CR354532_1010 CDS_1150931-1152784 81.2 5.5e-23 1
CR354532_0700 CDS_819630-821021 61.1 2.8e-17 1
CR354532_0328 CDS_376248-375205 60.4 4.2e-17 1
CR354532_0756 CDS_887034-884899 50.5 2.8e-14 1
CR354532_0747 CDS_876774-875482 40.0 2.6e-11 1
CR354532_1083 CDS_1231249-1230278 32.0 5e-09 1
CR354532_0007 CDS_11441-13357 30.1 1.6e-08 1
CR354532_0261 CDS_298991-297675 27.6 8.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR354532_1150 1/2 60 125 .. 1 87 [] 103.3 3.1e-29
CR354532_0538 2/2 76 141 .. 1 87 [] 94.7 8.6e-27
CR354532_0060 1/1 405 470 .. 1 87 [] 92.3 3.9e-26
CR354532_0026 1/1 543 608 .. 1 87 [] 85.1 4.5e-24
CR354532_1010 1/1 241 306 .. 1 87 [] 81.2 5.5e-23
CR354532_0700 1/1 239 303 .. 1 87 [] 61.1 2.8e-17
CR354532_0328 1/1 120 188 .. 1 87 [] 60.4 4.2e-17
CR354532_0756 1/1 482 547 .. 1 87 [] 50.5 2.8e-14
CR354532_0747 1/1 222 287 .. 1 87 [] 40.0 2.6e-11
CR354532_1083 1/1 130 195 .. 1 87 [] 32.0 5e-09
CR354532_0007 1/1 400 469 .. 1 87 [] 30.1 1.6e-08
CR354532_0261 1/1 224 288 .. 1 87 [] 27.6 8.9e-08

Alignments of top-scoring domains:
CR354532_1150: domain 1 of 2, from 60 to 125: score 103.3, E = 3.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++ +L + tel++ q
CR354532_1 60 AKSSFLANMSHEIRTPLNGIIGMSGILSD---------TELNPSQ-- 95

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ti+ +++ ll Lind+Ldls+ie+g
CR354532_1 96 ----------AEYLQTIETSSQTLLLLINDILDLSKIESG 125

CR354532_0538: domain 2 of 2, from 76 to 141: score 94.7, E = 8.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+++I+g+++lL+e +++ +q
CR354532_0 76 KKSEFLANMSHEIRTPMNGIIGLSSLLQE---------MDMPKDQ-- 111

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ + ++ +ll+Lind+Ld+s+ieag
CR354532_0 112 ----------KEYIQMLNISSLSLLDLINDILDFSKIEAG 141

CR354532_0060: domain 1 of 1, from 405 to 470: score 92.3, E = 3.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flanlsHE+RTP+++++g+++lLl+ t+l+ eq
CR354532_0 405 AKSTFLANLSHEIRTPMNGMLGLSQLLLK---------TDLTQEQ-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l t+l++++++ +++nd+Ld+s+ie+g
CR354532_0 441 ----------RHHLLTLLDSGKHMMSILNDILDFSKIEQG 470

CR354532_0026: domain 1 of 1, from 543 to 608: score 85.1, E = 4.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++I+g+++lL + t+l+ q
CR354532_0 543 AKSSFLAHMSHEIRTPMNGIMGTLHLLDD---------TTLDNAQ-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ti++++e l +n++Ld+s+ieag
CR354532_0 579 ----------KHYTKTIISSGEILMGVLNNVLDYSKIEAG 608

CR354532_1010: domain 1 of 1, from 241 to 306: score 81.2, E = 5.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ef+a++sHE+RTPL++I+g++e+L+e ++l+
CR354532_1 241 SKVEFIATMSHEIRTPLNVILGALEILEE---------EPLTQHG-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++++a+ ll+++nd+Ld+s++++g
CR354532_1 277 ----------QKFTVSAHNAAKILLSQLNDILDYSKLDSG 306

CR354532_0700: domain 1 of 1, from 239 to 303: score 61.1, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++++sHELRTPL+ ++++lL++ +++e+
CR354532_0 239 QQKRLIRDVSHELRTPLARHNLALHLLRK-----------RTPEE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l+++++e++ +++L+ ++L++srie+
CR354532_0 273 ---------YQHLLDRLEHESDEMNNLVTEILEFSRIENA 303

CR354532_0328: domain 1 of 1, from 120 to 188: score 60.4, E = 4.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++++L+e++ ++ls ++
CR354532_0 120 LRNSILLSVSHDLRTPLATIIGTLSTLEEYM-------DKLSKAEK- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++++ e++rl + i++lL+ +++++g
CR354532_0 159 ----------AELFDSAIVESNRLYQYIENLLQATKLQHG 188

CR354532_0756: domain 1 of 1, from 482 to 547: score 50.5, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L + ++++e+
CR354532_0 482 YLENLSSRLSHELRTPVAVVRSSIENLSM---------HNQDEDS-- 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ ++++ ++rl+ +++ + + +rie+
CR354532_0 518 ----------QRYIARAQDGIHRLSTILSSMTEATRIEQS 547

CR354532_0747: domain 1 of 1, from 222 to 287: score 40.0, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f +++sHELRTPL +I+g+++lL ++ +
CR354532_0 222 RERSFNRYASHELRTPLMVIKGTISLLGQ---------SNEPVFI-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++l++++ +++ + lL l+r e
CR354532_0 258 ----------EKQRQRLLSASNEMNDFVTTLLSLTRDEDL 287

CR354532_1083: domain 1 of 1, from 130 to 195: score 32.0, E = 5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++sHEL+TP+++++g+a l + + ++ q
CR354532_1 130 QEMKFAKYASHELKTPIAVVIGAANLQAM---------KDDPDFQ-- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+il +a+ + + ++ lL + + e+
CR354532_1 166 ----------SKQRERILIAANNMHATVEVLLSIVKQENV 195

CR354532_0007: domain 1 of 1, from 400 to 469: score 30.1, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ +++HE+++PL+aIr y++ l + + s++++
CR354532_0 400 IVGELGGSIAHEINQPLSAIRNYSQGGLVRIN------KGSSADDL- 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i++++ r ++++++l+ l + +
CR354532_0 440 ----------KVVLEKIQQQVIRADDIVQRLRSLIKKRPI 469

CR354532_0261: domain 1 of 1, from 224 to 288: score 27.6, E = 8.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +++H+LRTP++ +++ +e Ll t+ s+ q+
CR354532_0 224 SLKSLSVGMAHDLRTPIARMKLRLESLLV---------TNNSPHQNE 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le ++++e ll + n +L+++ + +g
CR354532_0 262 -------------LEACHDDLEILLGMFNGMLEIANLNSG 288


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 5 0|=
-13 33 1|*====
-12 130 45|======*============
-11 245 236|=================================*=
-10 359 439|==================================================== *
-9 373 453|====================================================== *
-8 307 339|============================================ *
-7 229 213|==============================*==
-6 125 123|=================*
-5 70 67|=========*
-4 49 36|=====*=
-3 27 19|==*=
-2 13 10|=*
-1 5 5|*
0 1 2|*
1 3 1|*
2 2 0|=
3 1 0|=
4 0 0|
> 5 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 198.1381
P(chi-square) = 1.81e-36

Total sequences searched: 1997

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: