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Classification of phyla is from NCBI page
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3 accessions found for Photobacterium profundum SS9  

Data for CR354532  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CR354532.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR354532_0377 CDS_431660-430047 40.8 4.9e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR354532_0377 1/1 328 392 .. 2 70 .] 40.8 4.9e-12

Alignments of top-scoring domains:
CR354532_0377: domain 1 of 1, from 328 to 392: score 40.8, E = 4.9e-12
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeir
R+ ARELHD++gQ+++ai +q+ l+ r + ++ + ++++i
CR354532_0 328 RKSVARELHDEIGQNITAIQIQARLVDRTT--QEL--TTKNTAETIN 370

elarealaevRrllgdLRpaal<-*
+la + + + +ll++LRp +l
CR354532_0 371 TLAMRIHSTTKQLLTQLRPHIL 392


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 10 0|==
-13 84 0|===========
-12 120 22|==*============
-11 158 183|==================== *
-10 472 424|====================================================*======
-9 440 482|======================================================= *
-8 237 371|============================== *
-7 155 233|==================== *
-6 110 132|============== *
-5 90 70|========*===
-4 55 37|====*==
-3 25 19|==*=
-2 14 9|=*
-1 15 4|*=
0 3 2|*
1 3 1|*
2 1 0|=
3 2 0|=
> 4 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 536.8916
P(chi-square) = 0

Total sequences searched: 1997

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: