Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Acinetobacter sp. ADP1  

Data for CR543861  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR543861.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR543861_2786 CDS_2998466-3001264 90.8 1.8e-25 1
CR543861_2284 CDS_2458045-2454581 76.7 1.8e-21 1
CR543861_3215 CDS_3483248-3484612 76.2 2.4e-21 1
CR543861_2699 CDS_2903746-2901101 62.5 1.9e-17 1
CR543861_1494 CDS_1629827-1631155 55.9 1.3e-15 1
CR543861_2046 CDS_2209947-2208598 54.5 3.5e-15 1
CR543861_1301 CDS_1417133-1415826 53.8 5.3e-15 1
CR543861_0562 CDS_614467-616164 53.3 7.5e-15 1
CR543861_0240 CDS_260849-259269 52.6 1.2e-14 1
CR543861_1251 CDS_1366202-1365093 52.6 1.2e-14 1
CR543861_0650 CDS_711588-713228 50.4 4.9e-14 1
CR543861_3131 CDS_3390195-3393725 50.3 5.3e-14 1
CR543861_2687 CDS_2891157-2889832 47.7 2.9e-13 1
CR543861_3066 CDS_3302651-3304108 45.9 9.3e-13 1
CR543861_2879 CDS_3104442-3103183 41.8 1.3e-11 1
CR543861_0533 CDS_583098-584363 41.4 1.8e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR543861_2786 1/1 287 353 .. 1 87 [] 90.8 1.8e-25
CR543861_2284 1/1 680 746 .. 1 87 [] 76.7 1.8e-21
CR543861_3215 1/1 226 292 .. 1 87 [] 76.2 2.4e-21
CR543861_2699 1/1 656 724 .. 1 87 [] 62.5 1.9e-17
CR543861_1494 1/1 222 284 .. 1 87 [] 55.9 1.3e-15
CR543861_2046 1/1 223 289 .. 1 87 [] 54.5 3.5e-15
CR543861_1301 1/1 210 276 .. 1 87 [] 53.8 5.3e-15
CR543861_0562 1/1 339 403 .. 1 87 [] 53.3 7.5e-15
CR543861_0240 1/1 315 379 .. 1 87 [] 52.6 1.2e-14
CR543861_1251 1/1 137 194 .. 1 79 [. 52.6 1.2e-14
CR543861_0650 1/1 314 379 .. 1 87 [] 50.4 4.9e-14
CR543861_3131 1/1 816 881 .. 1 87 [] 50.3 5.3e-14
CR543861_2687 1/1 220 282 .. 1 87 [] 47.7 2.9e-13
CR543861_3066 1/1 260 318 .. 1 87 [] 45.9 9.3e-13
CR543861_2879 1/1 180 248 .. 1 87 [] 41.8 1.3e-11
CR543861_0533 1/1 177 245 .. 1 87 [] 41.4 1.8e-11

Alignments of top-scoring domains:
CR543861_2786: domain 1 of 1, from 287 to 353: score 90.8, E = 1.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g+++l+l+ ++ls eq
CR543861_2 287 AKSVFLANISHELRTPLNSIDGFIHLMLR--------QQNLSNEQ-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +ti++++ +ll+Lind+Ld+s+i+ag
CR543861_2 324 ----------RLYMQTIRKSSAHLLALINDVLDFSKIDAG 353

CR543861_2284: domain 1 of 1, from 680 to 746: score 76.7, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gy++lL++ +e+ + q
CR543861_2 680 AKSRYVVGISHELRTPLNSILGYSQLLQK---------QEQLSAQG- 716

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i r++++l +Li+ lLdlsrie+g
CR543861_2 717 ----------QTALGVISRSGQHLTSLIDGLLDLSRIETG 746

CR543861_3215: domain 1 of 1, from 226 to 292: score 76.2, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHELRTPLt+++gy+e+ + +e +
CR543861_3 226 MRKDFVDNISHELRTPLTVLSGYIETFTD---------QEDLNPR-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ ++++++r+++L+ndlL ls +e++
CR543861_3 262 ---------WKRAFDQMQSQTKRMNALVNDLLLLSNLENN 292

CR543861_2699: domain 1 of 1, from 656 to 724: score 62.5, E = 1.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL+a++g a++L+ ++ ls+ +r
CR543861_2 656 LRSALLSSVSHDLRSPLAAMIGSADTLKYYS-------VQLSDTDR- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ti+ e+erl+r i++lLd++r++++
CR543861_2 695 ----------DSLLDTIHIEGERLDRYIQNLLDMTRLGHQ 724

CR543861_1494: domain 1 of 1, from 222 to 284: score 55.9, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+ ++sHELRTPLt ++g+++l+++++ ++
CR543861_1 222 REREFTGDVSHELRTPLTILKGNVQLCQTRY-------GH------- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i++ +e ++ L++ lL ++r +
CR543861_1 255 ----------DKALTRIHNTIEDMQLLVDTLLAIARNTVE 284

CR543861_2046: domain 1 of 1, from 223 to 289: score 54.5, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHELR PL+aI++ +el+++ ++ + +
CR543861_2 223 AEQRFTADASHELRSPLSAIQMRLELIKR---------KFADIDSL- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+ +++r +++++lL l+r++
CR543861_2 260 ----------NADIDNIQIDVKRSTQILENLLLLARLDPS 289

CR543861_1301: domain 1 of 1, from 210 to 276: score 53.8, E = 5.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an++HELRTPLta+++ ++lLl+ t+++++
CR543861_1 210 QQQVFIANAAHELRTPLTALKLQTSLLLK---------TPQDSQI-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l+ + +++r+ +L+++l+ l+ e
CR543861_1 246 ---------YDENLSDLSLSLKRMTHLVDQLMSLAHQEVH 276

CR543861_0562: domain 1 of 1, from 339 to 403: score 53.3, E = 7.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sHEL+TPL+++++ +e+++++ ++++e+
CR543861_0 339 SRRQWVADTSHELKTPLSVLQAQIEAMQDGI-------RKATPEH-- 376

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + +++ +l +L +dl dl++++a+
CR543861_0 377 -------------LAAMMSQISSLKKLTQDLADLAQADAQ 403

CR543861_0240: domain 1 of 1, from 315 to 379: score 52.6, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI + el + s++q
CR543861_0 315 ALGQLSASIAHEIRNPLAAIAQANELFTD----------SDSAQQ-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i ++++r++++i+d L ++r a
CR543861_0 350 ----------KQLQYMIAKQTKRINSIIEDTLGMARNHAT 379

CR543861_1251: domain 1 of 1, from 137 to 194: score 52.6, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HE+++PL +Irg+++lL + l++++
CR543861_1 137 VARQLIRGVAHEIKNPLGGIRGATQLLAR----------SLNDPK-- 171

peLRledpeyreyletilreaerllrLindlL<-*
y+e++++i++e++rl++L + +L
CR543861_1 172 ---------YAEFTDIIINEVDRLRNLADTML 194

CR543861_0650: domain 1 of 1, from 314 to 379: score 50.4, E = 4.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++++sHELRTP++ Ir+ e+L e +++ +
CR543861_0 314 AQRELMRAVSHELRTPVARIRFGMEMLAE--------EDDYNYRI-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i+r++e l+ Li+++++++++e+g
CR543861_0 351 -----------QQMEMIDRDIEALNTLIDEIMTYAKLEQG 379

CR543861_3131: domain 1 of 1, from 816 to 881: score 50.3, E = 5.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +P++a r+++ +L+ + + ++
CR543861_3 816 SKSRFIAAASHDLLQPMHAARLFSTALEQ---------SVSTQDD-- 851

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++r+++ +++++ lLd++r+e g
CR543861_3 852 ----------RKTLQQLDRALHGAESMLSALLDIARLEGG 881

CR543861_2687: domain 1 of 1, from 220 to 282: score 47.7, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTP+ta+ + +++Ll ++ ++
CR543861_2 220 EQKQFVADAAHELRTPITALNLQTKILLSQF-------PD------- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + + + r+++L+ +lL l++ +
CR543861_2 253 ----------HAALQNLGKGLARIQHLVTQLLALAKQDVS 282

CR543861_3066: domain 1 of 1, from 260 to 318: score 45.9, E = 9.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt Ir++ae+L +
CR543861_3 260 DRQIMLAGISHDLRTPLTRIRLTAEMLPD------------------ 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e + +++ +++++n++ + r ++
CR543861_3 289 ----------EFLREGLVYDVDDMDAILNQFISYMRDGSD 318

CR543861_2879: domain 1 of 1, from 180 to 248: score 41.8, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ ++H+LR P ++I+g++++L++e ++l+e+ +
CR543861_2 180 SKDKFFSIIAHDLRAPFHGILGFSDVLETEI-------ETLDEQGI- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ a+ +L+++lL+ + e g
CR543861_2 219 ----------RDIAGYLRSTAQATFKLLENLLQWAMSEGG 248

CR543861_0533: domain 1 of 1, from 177 to 245: score 41.4, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sH+LR P ++++g++e+L + ++++l++ +
CR543861_0 177 SKTKFFSIISHDLRAPFHGLLGFSEVLAK-------ERETLDDSSI- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ +++ +L++ lL + +e g
CR543861_0 216 ----------QNIADYLYETSQSTYNLLESLLNWAMAEGG 245


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 10 0|=
-13 55 2|*====
-12 189 75|======*=========
-11 328 394|============================ *
-10 575 731|================================================ *
-9 656 755|======================================================= *
-8 547 565|============================================== *
-7 367 356|=============================*=
-6 235 205|=================*==
-5 150 112|=========*===
-4 94 60|====*===
-3 49 31|==*==
-2 20 16|=*
-1 16 8|*=
0 10 4|*
1 3 2|*
2 2 1|*
3 2 0|=
4 0 0|
> 5 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 278.3388
P(chi-square) = 0

Total sequences searched: 3325

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: