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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Aromatoleum aromaticum EbN1  

Data for CR555306  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR555306.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR555306_0094 CDS_102893-100137 91.7 1.3e-25 1
CR555306_3455 CDS_3586583-3591142 90.8 2.2e-25 1
CR555306_3703 CDS_3844013-3842538 90.8 2.2e-25 1
CR555306_0412 CDS_459408-455791 87.2 2.3e-24 1
CR555306_1703 CDS_1802421-1803647 82.7 4.2e-23 1
CR555306_0624 CDS_691202-689613 72.1 4.3e-20 1
CR555306_2209 CDS_2298247-2299815 67.9 6.7e-19 1
CR555306_2331 CDS_2430383-2429316 66.5 1.7e-18 1
CR555306_2138 CDS_2238298-2236400 65.1 4.1e-18 1
CR555306_3563 CDS_3692926-3691469 64.9 4.7e-18 1
CR555306_3931 CDS_4085859-4082812 64.6 5.7e-18 1
CR555306_1122 CDS_1194620-1193226 63.8 9.8e-18 1
CR555306_1871 CDS_1976464-1977732 62.6 2.1e-17 1
CR555306_1681 CDS_1784893-1783016 60.6 8.2e-17 1
CR555306_0529 CDS_586269-587840 52.2 1.9e-14 1
CR555306_3048 CDS_3190379-3192517 50.7 4.9e-14 2
CR555306_3846 CDS_3993104-3990804 48.6 2e-13 1
CR555306_1587 CDS_1685840-1683693 48.5 2.2e-13 1
CR555306_1728 CDS_1831860-1829944 47.3 4.8e-13 1
CR555306_3682 CDS_3819658-3821106 44.9 2.3e-12 1
CR555306_3712 CDS_3851268-3852737 44.6 2.7e-12 1
CR555306_3899 CDS_4047776-4049611 44.5 2.9e-12 1
CR555306_2119 CDS_2216912-2215686 42.0 1.5e-11 1
CR555306_2352 CDS_2453064-2451088 41.8 1.7e-11 1
CR555306_0511 CDS_563377-564906 37.7 2.4e-10 1
CR555306_1939 CDS_2038046-2039587 36.2 6.5e-10 1
CR555306_2530 CDS_2651280-2649931 29.0 7.4e-08 1
CR555306_0071 CDS_65489-62958 28.2 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR555306_0094 1/1 683 750 .. 1 87 [] 91.7 1.3e-25
CR555306_3455 1/1 865 930 .. 1 87 [] 90.8 2.2e-25
CR555306_3703 1/1 263 331 .. 1 87 [] 90.8 2.2e-25
CR555306_0412 1/1 535 603 .. 1 87 [] 87.2 2.3e-24
CR555306_1703 1/1 171 239 .. 1 87 [] 82.7 4.2e-23
CR555306_0624 1/1 292 357 .. 1 87 [] 72.1 4.3e-20
CR555306_2209 1/1 310 375 .. 1 87 [] 67.9 6.7e-19
CR555306_2331 1/1 135 193 .. 1 80 [. 66.5 1.7e-18
CR555306_2138 1/1 268 333 .. 1 87 [] 65.1 4.1e-18
CR555306_3563 1/1 258 323 .. 1 87 [] 64.9 4.7e-18
CR555306_3931 1/1 630 697 .. 1 87 [] 64.6 5.7e-18
CR555306_1122 1/1 241 307 .. 1 87 [] 63.8 9.8e-18
CR555306_1871 1/1 209 274 .. 1 87 [] 62.6 2.1e-17
CR555306_1681 1/1 405 473 .. 1 87 [] 60.6 8.2e-17
CR555306_0529 1/1 296 362 .. 1 87 [] 52.2 1.9e-14
CR555306_3048 2/2 480 555 .. 1 87 [] 50.4 6.3e-14
CR555306_3846 1/1 408 472 .. 1 87 [] 48.6 2e-13
CR555306_1587 1/1 492 564 .. 1 87 [] 48.5 2.2e-13
CR555306_1728 1/1 394 464 .. 1 87 [] 47.3 4.8e-13
CR555306_3682 1/1 273 339 .. 1 87 [] 44.9 2.3e-12
CR555306_3712 1/1 264 323 .. 1 87 [] 44.6 2.7e-12
CR555306_3899 1/1 392 460 .. 1 87 [] 44.5 2.9e-12
CR555306_2119 1/1 321 387 .. 1 87 [] 42.0 1.5e-11
CR555306_2352 1/1 435 505 .. 1 87 [] 41.8 1.7e-11
CR555306_0511 1/1 284 344 .. 1 79 [. 37.7 2.4e-10
CR555306_1939 1/1 147 213 .. 1 87 [] 36.2 6.5e-10
CR555306_2530 1/1 236 294 .. 1 87 [] 29.0 7.4e-08
CR555306_0071 1/1 611 681 .. 1 87 [] 28.2 1.2e-07

Alignments of top-scoring domains:
CR555306_0094: domain 1 of 1, from 683 to 750: score 91.7, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHELRTPLt+Ir+++e+Ll+ d++ ++r
CR555306_0 683 LKDDFMSSVSHELRTPLTSIRAFSEMLLD--------DPDIALPDR- 720

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i +e+erl rL+n++Ldl++ie+g
CR555306_0 721 ----------MRFLGIIVSETERLTRLVNQVLDLAKIESG 750

CR555306_3455: domain 1 of 1, from 865 to 930: score 90.8, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++e+L + t lse q
CR555306_3 865 AKSAFLAAMSHEIRTPMNGVMGLIEVLAR---------TSLSEHQ-- 900

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ti ++ llr+i+d+Ld+s+ieag
CR555306_3 901 ----------ADLVATICGSSSTLLRIIDDILDFSKIEAG 930

CR555306_3703: domain 1 of 1, from 263 to 331: score 90.8, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHELRTPL+a++g++ +Ll++l +el++eq
CR555306_3 263 AKDHFLASMSHELRTPLNAVIGFTGTLLMKL------PGELNPEQ-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le++++ a++ll+LindlL l++ieag
CR555306_3 302 ----------TRQLEIVRNNARHLLALINDLLNLAKIEAG 331

CR555306_0412: domain 1 of 1, from 535 to 603: score 87.2, E = 2.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++ +++lL +d++lse+q
CR555306_0 535 YKSQFLANMSHELRTPLNSLMILSSLLMQ------NKDGNLSEKQ-- 573

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll+Lind+Ldls+ieag
CR555306_0 574 ----------VEFASTIHSAGTDLLDLINDILDLSKIEAG 603

CR555306_1703: domain 1 of 1, from 171 to 239: score 82.7, E = 4.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+++g++e+L + a+++ ++e
CR555306_1 171 MRRDFIANVSHELRTPLTVVIGFLETLID------AHEDLEPAEA-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + +++ r+++Li+dlL+ls +e+g
CR555306_1 210 ----------MRYLRLAFDQSWRMQSLIEDLLTLSALETG 239

CR555306_0624: domain 1 of 1, from 292 to 357: score 72.1, E = 4.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPLt++++ ++l+l e ++eq+
CR555306_0 292 AQQRFIADAAHQMRTPLTGLKMQTDLALL----------ETDPEQL- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++i ++++r ++Li +lL l+r+ea
CR555306_0 328 ----------RESLQRIADSTDRASHLITQLLSLARAEAS 357

CR555306_2209: domain 1 of 1, from 310 to 375: score 67.9, E = 6.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL+a++ +aelL e +++ + q
CR555306_2 310 ALGRLTASMAHEIRNPLSAVMQAAELLTE---------EKRADVQ-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i + a+r++r+++d+L l r e+
CR555306_2 346 ----------VRLVRIINDNARRIERMVRDVLALGRREEA 375

CR555306_2331: domain 1 of 1, from 135 to 193: score 66.5, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+++nl+HE+++PL +Irg a+lL++ el+++q+
CR555306_2 135 ASRELIRNLAHEIKNPLGGIRGSAQLLER----------ELGDPQL- 170

peLRledpeyreyletilreaerllrLindlLd<-*
rey+e+i+ ea+rl++L ++lL+
CR555306_2 171 ----------REYTEVIIAEADRLQDLMSRLLT 193

CR555306_2138: domain 1 of 1, from 268 to 333: score 65.1, E = 4.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++a+ +++ L ++ +
CR555306_2 268 SKSRFLAAASHDLRQPMHALGLFIAELSQ---------HTHAPAS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+i +ae +++L++ lLd+s+++ag
CR555306_2 304 ----------RRLVERIAASAEAMENLLDSLLDISKLDAG 333

CR555306_3563: domain 1 of 1, from 258 to 323: score 64.9, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++HELRTPL+++r +a+ +l+ ++ +++
CR555306_3 258 REKRFLADAAHELRTPLAVLRIHAQNALD---------APDPADR-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + + ++r rL+ +lL+l+r+e g
CR555306_3 294 ----------AESLHQLVHGVDRSTRLVAQLLTLARLEPG 323

CR555306_3931: domain 1 of 1, from 630 to 697: score 64.6, E = 5.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla +sHELR PL+a++g +++L + +++ + ++
CR555306_3 630 AKDEFLAIVSHELRSPLNALKGWSQVLTA--------SGNPEPATV- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e i+r +++ rLi+dlLd sri +g
CR555306_3 668 ----------LRAAEAIKRNIDHQARLIDDLLDTSRIISG 697

CR555306_1122: domain 1 of 1, from 241 to 307: score 63.8, E = 9.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+++HELRTP++ +++ + ++l ++++++
CR555306_1 241 RLSDFSADIAHELRTPVSNLMTQTAVCLS---------RPCNADE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + l+e er+ r++ d+L ++++e+g
CR555306_1 277 ---------YRDVLASNLEEYERIARMVGDMLFIAKAENG 307

CR555306_1871: domain 1 of 1, from 209 to 274: score 62.6, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL + + +elL++ l++ +
CR555306_1 209 RERLFTSDVSHELRTPLMIVATSCELLEA---------VSLPPRE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ +i r+ae + +L++ +L+l r++ +
CR555306_1 245 ----------RDLVARIGRAAEEMGDLVQTFLTLVRMRPE 274

CR555306_1681: domain 1 of 1, from 405 to 473: score 60.6, E = 8.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+L+ PL +I gy+++Lle++ ++ l++e
CR555306_1 405 ELESFSYAISHDLKAPLRGIDGYSQILLEDY------RDRLDDEG-- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l i+r + ++ +Li+dlL ++ ie
CR555306_1 444 ----------RQFLANIRRGVAQMHELIEDLLAYAHIERS 473

CR555306_0529: domain 1 of 1, from 296 to 362: score 52.2, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H+L++PL ++ +a+l+ + + ++e +
CR555306_0 296 ALGTMVGGVAHQLNNPLVGVVNMAQLATR---------EVEDPERT- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l i+r++e ++ L++++L++s+ +
CR555306_0 333 ----------RELLGEIRRAGEDCRTLVRRMLEFSKVSSF 362

CR555306_3048: domain 2 of 2, from 480 to 555: score 50.4, E = 6.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++++HE+++PL ++g+ae L+ + ++ + ++
CR555306_3 480 SLGQFASGIAHEINNPLGLVSGFAEELQSLM-------EAIPNAAQI 519

peLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
p L r+ l ti+++a+r+ ++ ++lL +sr +++
CR555306_3 520 PDLEiI-----RDGLTTIQEQAQRCKAITDNLLLFSRRQSP 555

CR555306_3846: domain 1 of 1, from 408 to 472: score 48.6, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +la+++HEL++PL+++ + a +L+e ++ +
CR555306_3 408 ALGSLLAGVAHELNNPLSVVVARAVMLEE----------QGDPAT-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i+ +aer+ r+++ +L ++r +++
CR555306_3 443 ----------QAAAAKIRIAAERCARIVRTFLAMARQQQP 472

CR555306_1587: domain 1 of 1, from 492 to 564: score 48.5, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e ++ l+HE+++PLt I++ ae L +l + ++e r
CR555306_1 492 AWAEVARRLAHEIKNPLTPIQLSAERLAYKLA------DRVDAEGRE 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti++++e++ +L+n ++d++r+ +
CR555306_1 533 IL--------ERATRTIINQVESMKNLVNGFRDYARLPGP 564

CR555306_1728: domain 1 of 1, from 394 to 464: score 47.3, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ +l+HEL++PL+aI yae L+++ d + l+ e +
CR555306_1 394 VLGELSGTLAHELNQPLAAIGNYAESLRRRID-----NGRLTGEAV- 434

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i +aer +++ +++d+++ +a
CR555306_1 435 ----------REASSEISGQAERAAAILGRIRDFAKKRAA 464

CR555306_3682: domain 1 of 1, from 273 to 339: score 44.9, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PLt++++++ + ++ + ++++ +
CR555306_3 273 AIGRLTAGIAHEINNPLTGMLTAINTFQR---------HGADPQRA- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++r + ++++ ++ lL ++ e
CR555306_3 310 ----------ERTLSLLQRGLTQIRNTVSALLVEAKVEDR 339

CR555306_3712: domain 1 of 1, from 264 to 323: score 44.6, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la++sH+LRTPL+ +r+ +e+ + ++e +
CR555306_3 264 DRALILAGVSHDLRTPLARLRLGVEM------------SGAPETE-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++e ++r+i ++Ld+ r e +
CR555306_3 297 -------------VAAMVADVEEMDRIIGQFLDFGRGEPQ 323

CR555306_3899: domain 1 of 1, from 392 to 460: score 44.5, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f ++sH+LR PL aI g+a +L+eel + +++
CR555306_3 392 ELKAFSYSVSHDLRAPLRAIDGFARILEEELG------ERIDPDA-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i++++ r+++Li+dl l+++
CR555306_3 431 ----------REHIVRIRKAGMRMSHLIDDLIKLAQLARH 460

CR555306_2119: domain 1 of 1, from 321 to 387: score 42.0, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt I+g++ L+ +l+++ +
CR555306_2 321 AVGQLTGGLAHDFNNLLTIIIGNLAELKS----------KLPPDGPA 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le +l++a+r +Li +lL++sr +
CR555306_2 358 ----------GEHLEPALHAARRGAELIKRLLTFSRGQGS 387

CR555306_2352: domain 1 of 1, from 435 to 505: score 41.8, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y +l++l+ ++ + +++
CR555306_2 435 TMGEMASTLAHELNQPLAAIASYNTGCLNRLE-----QATIDRDEL- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ r+a+r ++i+++ d+ r ++
CR555306_2 476 ----------RDIHAKLGRQARRAGEIIRRVHDFVRRAEP 505

CR555306_0511: domain 1 of 1, from 284 to 344: score 37.7, E = 2.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sHEL+TPL+++r + lL++++ +el++ q
CR555306_0 284 NRTRVLRHVSHELKTPLASLREGIALLKDGV------VGELTAGQ-- 322

peLRledpeyreyletilreaerllrLindlL<-*
+e + ++++ ++ l+ i+ lL
CR555306_0 323 ----------HEVVGILEHNTRALQLRIEGLL 344

CR555306_1939: domain 1 of 1, from 147 to 213: score 36.2, E = 6.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +l+H++++ Lt+++g++ L+e + ++ +
CR555306_1 147 AIGQLSGGLAHDFNNMLTVVMGNLAGLRE---------ARPDDGAL- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ + ++a+ +Li++lL++sr +
CR555306_1 184 ----------QEFVAPAMQAAQGGAQLIERLLTFSRQQPL 213

CR555306_2530: domain 1 of 1, from 236 to 294: score 29.0, E = 7.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ la++sH+L TP+t +r+ ael ++
CR555306_2 236 ERTRILAAISHDLQTPITRLRLRAELVED------------------ 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+++++ +++L + Ld++r
CR555306_2 265 ----------EAVRAKIQSDLDAMQALAKEGLDYARSLDV 294

CR555306_0071: domain 1 of 1, from 611 to 681: score 28.2, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ + ++ ++++ +e++
CR555306_0 611 TMGEMASTLAHELNQPLAAIANYCMGCVTRI-----QSGNVRSEDL- 651

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +aer ++i++++++ + ++
CR555306_0 652 ----------LVAMQKASFQAERAGKIIRRVREFVKKSEP 681


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 16 0|==
-13 59 3|*====
-12 175 94|======*======
-11 354 489|========================== *
-10 610 907|============================================ *
-9 773 937|======================================================== *
-8 716 701|==================================================*=
-7 560 442|===============================*========
-6 366 254|==================*========
-5 229 139|=========*=======
-4 112 74|=====*==
-3 54 39|==*=
-2 25 20|=*
-1 20 10|*=
0 16 5|*=
1 3 2|*
2 4 1|*
3 0 0|
4 1 0|=
5 4 0|=
6 0 0|
7 1 0|=
> 8 30 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 421.9799
P(chi-square) = 0

Total sequences searched: 4128

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 32K


Acknowledgements:

This research is funded by:

Developed by: