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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Aromatoleum aromaticum EbN1  

Data for CR555306  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CR555306.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR555306_3591 CDS_3718203-3716248 80.8 1.6e-23 1
CR555306_1976 CDS_2069358-2071304 65.4 5.5e-19 1
CR555306_3264 CDS_3414027-3412531 49.4 3e-14 1
CR555306_1311 CDS_1401463-1400198 34.0 9.9e-10 1
CR555306_3911 CDS_4063074-4065557 31.5 5.6e-09 1
CR555306_3245 CDS_3389438-3390463 30.6 1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR555306_3591 1/1 442 510 .. 1 70 [] 80.8 1.6e-23
CR555306_1976 1/1 435 505 .. 1 70 [] 65.4 5.5e-19
CR555306_3264 1/1 297 363 .. 1 70 [] 49.4 3e-14
CR555306_1311 1/1 220 286 .. 1 70 [] 34.0 9.9e-10
CR555306_3911 1/1 597 665 .. 1 70 [] 31.5 5.6e-09
CR555306_3245 1/1 132 199 .. 2 70 .] 30.6 1e-08

Alignments of top-scoring domains:
CR555306_3591: domain 1 of 1, from 442 to 510: score 80.8, E = 1.6e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ +ARELHDs++Q+L+ ++lq+++++ +l d++ ++ear++l++
CR555306_3 442 ERNLLARELHDSIAQGLAFMNLQVQMLESAL--DRNEAgEARDTLAM 486

irelarealaevRrllgdLRpaal<-*
+r+ ++e++++vR+ll ++R+ ++
CR555306_3 487 LRQGVQESYDDVRELLVHFRTRVE 510

CR555306_1976: domain 1 of 1, from 435 to 505: score 65.4, E = 5.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER IARELHDs++QsLs +k+q++l+ +l +++ ++ a + l+
CR555306_1 435 ERSIIARELHDSLAQSLSYMKIQASLLSSAL--QRPERrdDASDILA 479

eirelarealaevRrllgdLR.paal<-*
+++ ++ a++++R+ll+++R ++
CR555306_1 480 DMKGGINAAYRQLRELLSTFRlQMEG 505

CR555306_3264: domain 1 of 1, from 297 to 363: score 49.4, E = 3e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E IARE+HD++gQ L+++k+ l+ r + + + + + ++
CR555306_3 297 EKSAIAREIHDELGQLLTVLKMDLSCMREAG---GLDSRSVAKMLRM 340

relarealaevRrllgdLRpaal<-*
+ l ++ l vR+++++LRp +l
CR555306_3 341 ESLTDDILYRVRDIASTLRPKVL 363

CR555306_1311: domain 1 of 1, from 220 to 286: score 34.0, E = 9.9e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E a IARE+HD++gQ L+a+k+ + ++ + + e+ +d
CR555306_1 220 EKASIAREIHDELGQLLTALKMEVFCIK-----PGRSHdvELMSKAD 261

eirelarealaevRrllgdLRpaal<-*
++ l++ + vR+++++LRp +l
CR555306_1 262 AMGVLIDSIIVRVRDIATALRPKVL 286

CR555306_3911: domain 1 of 1, from 597 to 665: score 31.5, E = 5.6e-09
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ +A ELHD + +L+a+ l l+ ++ +l ++ e + l
CR555306_3 597 ERRKLAGELHDRASPNLAALQLTLSNLACAL--PASVLaEFEPMLGD 641

irelarealaevRrllgdLRpaal<-*
+++l+ ++ + +R++ ++LRpa+l
CR555306_3 642 AQALLLDTATGIREICTNLRPATL 665

CR555306_3245: domain 1 of 1, from 132 to 199: score 30.6, E = 1e-08
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..earealde
R +ARE HD++g +Ls+ikl + +++r+ + p+ e++e +e
CR555306_3 132 RSQLAREVHDVLGGMLSSIKLDVFRIQRRS---SGPAlaEIQEITQE 175

irelarealaevRrllgdLRpaal<-*
+ l++++++ +R++ +LRp l
CR555306_3 176 LLPLVQDTIDTARQISDELRPRML 199


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 12 0|=
-13 47 0|====
-12 95 46|===*====
-11 158 378|============== *
-10 435 877|===================================== *
-9 676 996|========================================================= *
-8 594 768|================================================== *
-7 552 483|========================================*=====
-6 489 273|======================*==================
-5 463 146|============*==========================
-4 232 76|======*=============
-3 148 39|===*=========
-2 83 20|=*=====
-1 53 10|*====
0 31 5|*==
1 18 2|*=
2 11 1|*
3 7 0|=
4 7 0|=
5 3 0|=
6 3 0|=
7 1 0|=
8 0 0|
9 0 0|
> 10 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2527.4333
P(chi-square) = 0

Total sequences searched: 4128

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: