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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Legionella pneumophila str. Paris  

Data for CR628336  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR628336.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR628336_2088 CDS_2364007-2361557 99.2 6.7e-28 2
CR628336_1891 CDS_2133204-2135936 99.0 7.8e-28 1
CR628336_2136 CDS_2432106-2434589 70.4 9.8e-20 1
CR628336_1178 CDS_1309172-1310758 60.1 8.3e-17 1
CR628336_1257 CDS_1392459-1391044 56.6 7.9e-16 1
CR628336_1395 CDS_1550959-1549592 52.0 1.6e-14 1
CR628336_1731 CDS_1947338-1946307 47.4 3.3e-13 1
CR628336_0780 CDS_873152-872079 45.4 1.2e-12 1
CR628336_2529 CDS_2877585-2876308 36.4 4.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR628336_1891 1/1 297 362 .. 1 87 [] 99.0 7.8e-28
CR628336_2088 1/2 194 260 .. 1 87 [] 71.0 6.7e-20
CR628336_2136 1/1 288 353 .. 1 87 [] 70.4 9.8e-20
CR628336_1178 1/1 310 376 .. 1 87 [] 60.1 8.3e-17
CR628336_1257 1/1 246 311 .. 1 87 [] 56.6 7.9e-16
CR628336_1395 1/1 231 295 .. 1 87 [] 52.0 1.6e-14
CR628336_1731 1/1 126 192 .. 1 87 [] 47.4 3.3e-13
CR628336_0780 1/1 138 204 .. 1 87 [] 45.4 1.2e-12
CR628336_2529 1/1 205 273 .. 1 87 [] 36.4 4.4e-10
CR628336_2088 2/2 592 660 .. 1 87 [] 28.2 8.9e-08

Alignments of top-scoring domains:
CR628336_1891: domain 1 of 1, from 297 to 362: score 99.0, E = 7.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+sHE+RTP+++++g++ +Lle ++l++ q
CR628336_1 297 QKSEFIANMSHEIRTPMNGVIGFTNVLLE---------SKLDPLQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+++a+ ll++ind+Ld+s+i+ag
CR628336_1 333 ----------LDYVKTIKSSAQDLLSIINDILDFSKIDAG 362

CR628336_2088: domain 1 of 2, from 194 to 260: score 71.0, E = 6.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELRTPL I+g +e+Ll+ + l++
CR628336_2 194 IKTQFFANVSHELRTPLMLILGSLEMLLA--------EKRLPSFV-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ a+ ll+ +ndlL +s+++ag
CR628336_2 231 ----------LNTLRRIQNNAQILLKHVNDLLNISKLDAG 260

CR628336_2136: domain 1 of 1, from 288 to 353: score 70.4, E = 9.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+an+sH+LRTPL+++ g+ael++e + ++ q
CR628336_2 288 VKTEFIANMSHDLRTPLSGVVGMAELMKE---------QVTDPVQ-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y e i +++++ll+L++ +Ld+ +++
CR628336_2 324 ----------VQYAEWIFDCSQQLLSLLDGILDIVSLGNV 353

CR628336_1178: domain 1 of 1, from 310 to 376: score 60.1, E = 8.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+++HELR+PL aI +++l ++ ++l+ee
CR628336_1 310 ALGRFSASIAHELRNPLGAIAHAIQLFGDN--------EDLNEEN-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i + er++r i ++L+lsr e
CR628336_1 347 ----------TRLKQLIMNNCERMNRVIKNVLQLSRREKS 376

CR628336_1257: domain 1 of 1, from 246 to 311: score 56.6, E = 7.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+++ a+++l+ ++ ee+
CR628336_1 246 REKRFAADAAHELRTPLAALKAQAQVALN---------SNDIEEK-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ +++r +++++lL++s++ +
CR628336_1 282 ----------NQALQKLIASVNRSTHIVQQLLTMSKLVPE 311

CR628336_1395: domain 1 of 1, from 231 to 295: score 52.0, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++++ ++sHELR PL+ ++ ++el +++ +l + +
CR628336_1 231 SKERLIQDISHELRSPLARLKIAIELGKKKT-------KHLADNE-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ rl++Li ++Ld++r+e
CR628336_1 269 -------------FARMEIETSRLNDLIGEILDFARLEKS 295

CR628336_1731: domain 1 of 1, from 126 to 192: score 47.4, E = 3.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+H++RTPL++ ++y+e L + + l+
CR628336_1 126 SIGTMTAQLAHQIRTPLSSAILYTEHLNN--------LPSLDHRI-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++ +++++i+dlL ++r +
CR628336_1 163 ----------KNWIHRLQECHASIEQQIQDLLLFARGTSI 192

CR628336_0780: domain 1 of 1, from 138 to 204: score 45.4, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f a+++HELR+P++ +r ++e+ l+ +++ e+
CR628336_0 138 HIKQFSASIAHELRNPIHYLRNATEITLT---------KPQTIET-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ l+t l+e ++l +Li++lL l+r e+g
CR628336_0 174 ---------YQHVLQTHLEEYQSLTQLIDNLLFLTRCEHG 204

CR628336_2529: domain 1 of 1, from 205 to 273: score 36.4, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef +sH+L+ PL aI+ +a ++e + + ++l
CR628336_2 205 DLEEFSYIISHDLKAPLRAIIQLATWIEE---------DCGNKLDLL 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +++ ++r++ +i+ lL+++r++
CR628336_2 243 S---------RKNLQLLRERTRRMSGMIDGLLQYARAGRV 273

CR628336_2088: domain 2 of 2, from 592 to 660: score 28.2, E = 8.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL a+ +++ ++e+l +e+ +eq
CR628336_2 592 ELDQFVYHASHDLKAPLPAMEHLISWIEEDL-------GEMLSEQS- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +++ a r+++L++ lL +++ +
CR628336_2 631 ----------KKYLLLLRQRASRMSKLLDGLLKYAQSGYV 660


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 7 0|=
-13 38 2|*===
-12 152 69|======*=========
-11 297 358|============================== *
-10 514 665|==================================================== *
-9 585 687|==========================================================*
-8 508 514|===================================================*
-7 344 324|================================*==
-6 231 186|==================*=====
-5 145 102|==========*====
-4 88 54|=====*===
-3 36 28|==*=
-2 27 15|=*=
-1 20 7|*=
0 11 4|*=
1 5 2|*
2 3 1|*
3 3 0|=
4 1 0|=
5 0 0|
> 6 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 238.4655
P(chi-square) = 1.326e-314

Total sequences searched: 3082

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: