Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for   

Data for CR628337  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR628337.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR628337_2084 CDS_2337646-2335196 98.7 9.4e-28 2
CR628337_1885 CDS_2100071-2102803 94.7 1.3e-26 1
CR628337_2117 CDS_2395875-2397905 70.8 7.2e-20 1
CR628337_1190 CDS_1318710-1320296 60.1 8e-17 1
CR628337_1262 CDS_1396319-1394904 55.1 2e-15 1
CR628337_1614 CDS_1778134-1779501 52.0 1.6e-14 1
CR628337_1736 CDS_1929987-1928956 47.1 3.9e-13 1
CR628337_0755 CDS_853728-852655 45.9 8.4e-13 1
CR628337_2387 CDS_2708113-2706836 37.5 2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR628337_1885 1/1 297 362 .. 1 87 [] 94.7 1.3e-26
CR628337_2117 1/1 280 338 .. 1 80 [. 70.8 7.2e-20
CR628337_2084 1/2 194 260 .. 1 87 [] 70.4 9.3e-20
CR628337_1190 1/1 310 376 .. 1 87 [] 60.1 8e-17
CR628337_1262 1/1 246 311 .. 1 87 [] 55.1 2e-15
CR628337_1614 1/1 231 295 .. 1 87 [] 52.0 1.6e-14
CR628337_1736 1/1 126 192 .. 1 87 [] 47.1 3.9e-13
CR628337_0755 1/1 138 204 .. 1 87 [] 45.9 8.4e-13
CR628337_2387 1/1 205 273 .. 1 87 [] 37.5 2e-10
CR628337_2084 2/2 592 660 .. 1 87 [] 28.2 8.5e-08

Alignments of top-scoring domains:
CR628337_1885: domain 1 of 1, from 297 to 362: score 94.7, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+sHE+RTP+++++g++ +Lle ++l++ q
CR628337_1 297 QKSEFIANMSHEIRTPMNGVIGFTNVLLE---------SKLDPLQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+++a+ ll++in +Ld+s+i+ag
CR628337_1 333 ----------LDYVKTIKSSAQDLLSIINAILDFSKIDAG 362

CR628337_2117: domain 1 of 1, from 280 to 338: score 70.8, E = 7.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+an+sH++RTPLt+++g++elL++ t +++eq
CR628337_2 280 AKTAFIANMSHDIRTPLTGVIGMSELLEN---------TVKDPEQ-- 315

peLRledpeyreyletilreaerllrLindlLd<-*
+e + +++++e ll+++nd+Ld
CR628337_2 316 ----------KEEAHMLHDSGEELLNMLNDILD 338

CR628337_2084: domain 1 of 2, from 194 to 260: score 70.4, E = 9.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELRTPL I+g +e+Ll+ + +l++
CR628337_2 194 IKTQFFANVSHELRTPLMLILGPLEMLLA--------EKKLPSFV-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++ a+ ll+ +ndlL +s+++ag
CR628337_2 231 ----------QNTLRHIQNNAQILLKHVNDLLNISKLDAG 260

CR628337_1190: domain 1 of 1, from 310 to 376: score 60.1, E = 8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+++HELR+PL aI +++l ++ ++l+ee
CR628337_1 310 ALGRFSASIAHELRNPLGAIAHAIQLFGDN--------EDLNEEN-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i + er++r i ++L+lsr e
CR628337_1 347 ----------TRLKQLIMNNCERMNRVIKNVLQLSRREKS 376

CR628337_1262: domain 1 of 1, from 246 to 311: score 55.1, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+++ a+++l+ ++ ee+
CR628337_1 246 REKRFAADAAHELRTPLAALKAQAQVALN---------SNEIEEK-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ +++r +++++lL++s++ +
CR628337_1 282 ----------NQALQKLIASVNRSTHIVQQLLTMSKLVPE 311

CR628337_1614: domain 1 of 1, from 231 to 295: score 52.0, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++++ ++sHELR PL+ ++ ++el +++ +l + +
CR628337_1 231 SKERLIQDISHELRSPLARLKIAIELGKKKT-------KHLADNE-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ rl++Li ++Ld++r+e
CR628337_1 269 -------------FARMEIETSRLNDLIGEILDFARLEKS 295

CR628337_1736: domain 1 of 1, from 126 to 192: score 47.1, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+H++RTPL++ ++y+e L + + l+
CR628337_1 126 SIGTMTAQLAHQIRTPLSSAILYTEHLNN--------LPSLDHRI-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++ +++++i+dlL ++r +
CR628337_1 163 ----------KNWIHRLQECHASIEKQIQDLLLFARGTSI 192

CR628337_0755: domain 1 of 1, from 138 to 204: score 45.9, E = 8.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f a+++HELR+P++ +r+++e+ l+ +++ e+
CR628337_0 138 HIKQFSASIAHELRNPIHYLRTATEITLT---------KPQTIET-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ l+t l+e ++l +Li++lL l+r e+g
CR628337_0 174 ---------YQHVLQTHLEEYQSLTQLIDNLLFLTRCEHG 204

CR628337_2387: domain 1 of 1, from 205 to 273: score 37.5, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef +sH+L+ PL aI+ +a ++e+ +l++
CR628337_2 205 DLEEFSYIISHDLKAPLRAIIQLATWIEEDCG------NKLDPLS-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +++ ++r++ +i+ lL+++r++
CR628337_2 244 ----------RKNLQLLRERTRRMSGMIDGLLQYARAGRV 273

CR628337_2084: domain 2 of 2, from 592 to 660: score 28.2, E = 8.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL a+ +++ ++e+l +e+ +eq
CR628337_2 592 ELDQFVYHASHDLKAPLPAMEHLISWIEEDL-------GEMLSEQS- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +++ a r+++L++ lL +++ +
CR628337_2 631 ----------KKYLLLLRQRASRMSKLLDGLLKYAQSGYV 660


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 9 0|=
-13 40 2|*===
-12 136 65|======*=======
-11 274 341|============================ *
-10 486 632|================================================= *
-9 558 653|======================================================== *
-8 461 489|=============================================== *
-7 364 308|==============================*======
-6 218 177|=================*====
-5 139 97|=========*====
-4 75 52|=====*==
-3 41 27|==*==
-2 25 14|=*=
-1 17 7|*=
0 9 3|*
1 5 2|*
2 5 1|*
3 2 0|=
4 0 0|
5 0 0|
> 6 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 211.2014
P(chi-square) = 6.633e-309

Total sequences searched: 2947

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: