Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Chlamydophila abortus S26/3  

Data for CR848038  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR848038.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR848038_0155 CDS_168600-167548 69.8 4.6e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR848038_0155 1/1 150 215 .. 1 87 [] 69.8 4.6e-20

Alignments of top-scoring domains:
CR848038_0155: domain 1 of 1, from 150 to 215: score 69.8, E = 4.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE+R+PL++I g+a+lL+e el+++ +
CR848038_0 150 ELGKMTATLAHEIRNPLSGIAGFASLLKE----------ELPSPRH- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i++ +++l+ L++ +L++++ +
CR848038_0 186 ----------QRMLASIIDGTRSLNTLVSSMLEYTKSQPL 215


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 12 0|===
-12 42 21|=====*=====
-11 85 110|====================== *
-10 182 204|============================================== *
-9 169 211|=========================================== *
-8 151 158|====================================== *
-7 102 99|========================*=
-6 90 57|==============*========
-5 49 31|=======*=====
-4 17 16|===*=
-3 13 8|=*==
-2 8 4|*=
-1 6 2|*=
0 2 1|*
1 1 0|=
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 67.5147
P(chi-square) = 4.667e-11

Total sequences searched: 961

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: