Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Ehrlichia ruminantium str. Gardel  

Data for CR925677  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR925677.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR925677_0209 CDS_339551-340984 89.9 9.1e-26 1
CR925677_0339 CDS_562657-560171 44.1 8.5e-13 1
CR925677_0723 CDS_1148540-1146408 36.7 1.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR925677_0209 1/1 241 310 .. 1 87 [] 89.9 9.1e-26
CR925677_0339 1/1 440 506 .. 1 87 [] 44.1 8.5e-13
CR925677_0723 1/1 487 558 .. 1 87 [] 36.7 1.1e-10

Alignments of top-scoring domains:
CR925677_0209: domain 1 of 1, from 241 to 310: score 89.9, E = 9.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL++I+g++e+++ + l++ ++
CR925677_0 241 SKSQFLANVSHELRTPLNSIIGFSEMIKS---------ESLGPIENS 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ey++ i++++ +ll+Lind+Ld+s++ea+
CR925677_0 279 DY--------KEYINDIHSSGVHLLSLINDILDFSKAEAN 310

CR925677_0339: domain 1 of 1, from 440 to 506: score 44.1, E = 8.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl + +++
CR925677_0 440 AIGQLAGGIAHDFNNILTAIIGFCDLLLI--------KHSTTDPS-- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +Li +lL +sr ++
CR925677_0 477 ----------FSDIMQIKQNANRATNLIKQLLAFSRKQTL 506

CR925677_0723: domain 1 of 1, from 487 to 558: score 36.7, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++P+t I ++ae L ++ k + s+++
CR925677_0 487 AWSDVARRIAHEIKNPITPIYLAAERLNSKYKK-----EIVSDQES- 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y++ti+r + +++ +++++ ++r+ +
CR925677_0 528 ---------FSRYVDTIIRHVTSIRGIVDEFAKFARMSDP 558


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 9 0|===
-13 24 0|========
-12 54 21|======*===========
-11 129 112|=====================================*=====
-10 169 208|========================================================= *
-9 177 215|==========================================================*
-8 150 161|================================================== *
-7 92 101|=============================== *
-6 52 58|================== *
-5 40 32|==========*===
-4 30 17|=====*====
-3 10 9|==*=
-2 3 4|=*
-1 2 2|*
0 5 1|*=
> 1 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 79.0238
P(chi-square) = 2.525e-13

Total sequences searched: 950

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: