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2 accessions found for Corynebacterium jeikeium K411  

Data for CR931997  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR931997.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR931997_0342 CDS_410727-412337 75.1 3.2e-21 1
CR931997_1634 CDS_1915125-1913389 74.7 4.2e-21 1
CR931997_1911 CDS_2227952-2226654 63.5 6.2e-18 1
CR931997_1272 CDS_1495804-1498500 59.1 1.1e-16 1
CR931997_1531 CDS_1806059-1804506 47.3 2.3e-13 1
CR931997_1431 CDS_1689573-1688446 44.4 1.6e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR931997_0342 1/1 316 380 .. 1 87 [] 75.1 3.2e-21
CR931997_1634 1/1 325 392 .. 1 87 [] 74.7 4.2e-21
CR931997_1911 1/1 163 229 .. 1 87 [] 63.5 6.2e-18
CR931997_1272 1/1 647 715 .. 1 87 [] 59.1 1.1e-16
CR931997_1531 1/1 275 350 .. 1 87 [] 47.3 2.3e-13
CR931997_1431 1/1 143 207 .. 1 87 [] 44.4 1.6e-12

Alignments of top-scoring domains:
CR931997_0342: domain 1 of 1, from 316 to 380: score 75.1, E = 3.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt++rgyael + ++++
CR931997_0 316 SMRRFIGDASHELRTPLTSVRGYAELYQS----------GATDDA-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +ea r++ L++dlL l r+++g
CR931997_0 351 ----------PMVIDRISEEAGRMSLLVEDLLALVRMDEG 380

CR931997_1634: domain 1 of 1, from 325 to 392: score 74.7, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+++++++ +el++ +
CR931997_1 325 LQRQFTSDVSHELRTPLTTVRMAADMIEDNA-------DELDPLT-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + +e++r + L+ dlL++sr +ag
CR931997_1 363 ----------ARAAHLMTKELDRFETLLGDLLEISRHDAG 392

CR931997_1911: domain 1 of 1, from 163 to 229: score 63.5, E = 6.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ aI++++e+L +ee +
CR931997_1 163 ARRDFVANVSHELKTPVGAISLLVETLMS---------VRDDEEAV- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ e++r++++i +l ls+++
CR931997_1 200 ----------EYFGSKLIVEVRRMNQMITELISLSKLQGA 229

CR931997_1272: domain 1 of 1, from 647 to 715: score 59.1, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sH+LRTPL++I++++++L + d el+ee r
CR931997_1 647 VGTALLTAVSHDLRTPLAGIKAAVSALNM-------DDMELDEESR- 685

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ eti+++++rl+ i +lLd+sr ++
CR931997_1 686 ----------SLLMETIESSTDRLETVIGNLLDMSRVNSN 715

CR931997_1531: domain 1 of 1, from 275 to 350: score 47.3, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagd.....tels
+ ++a++sHEL+TPLt++r+++elL + ++++++++ s
CR931997_1 275 KQKNLVADASHELKTPLTSLRTNIELLML-----ASQRkdgegPGIS 316

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ee+r +++ + ++ +++ ++ Li dl dl+r +++
CR931997_1 317 EEDR-----------KDLERDVIAQIDEMSGLIGDLVDLAREDSN 350

CR931997_1431: domain 1 of 1, from 143 to 207: score 44.4, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y++ L++++ +++ +
CR931997_1 143 VRRQMLSDLAHEMGTPLSVLTVYLDGLQDGV-------VDWNNAT-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ rl rL +d+ d sr+++
CR931997_1 181 -------------HTIMADQLTRLTRLMEDIDDVSRAQER 207


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 6 0|=
-13 19 1|*==
-12 80 48|======*=====
-11 192 249|============================ *
-10 348 462|================================================== *
-9 387 477|======================================================== *
-8 411 357|==================================================*========
-7 254 225|================================*====
-6 172 129|==================*======
-5 89 71|==========*==
-4 66 38|=====*====
-3 24 20|==*=
-2 32 10|=*===
-1 9 5|*=
0 4 2|*
1 2 1|*
2 2 0|=
3 0 0|
> 4 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 176.8090
P(chi-square) = 4.668e-32

Total sequences searched: 2104

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: