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3 accessions found for Natronomonas pharaonis DSM 2160  

Data for CR936257  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR936257.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR936257_0750 CDS_730801-732501 67.0 8.1e-19 1
CR936257_0309 CDS_319597-317801 62.6 1.4e-17 1
CR936257_1867 CDS_1809926-1810951 62.0 2e-17 2
CR936257_0922 CDS_895551-894535 58.4 2.1e-16 1
CR936257_0072 CDS_72837-70951 56.8 6e-16 1
CR936257_2547 CDS_2482683-2480734 54.8 2.3e-15 1
CR936257_2336 CDS_2296471-2300517 52.1 1.3e-14 2
CR936257_2623 CDS_2553487-2551961 50.9 2.8e-14 1
CR936257_0363 CDS_368858-367344 50.8 3e-14 1
CR936257_0071 CDS_70954-69266 35.8 5.5e-10 1
CR936257_0429 CDS_429408-431546 28.7 5.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR936257_0750 1/1 350 411 .. 1 87 [] 67.0 8.1e-19
CR936257_0309 1/1 401 462 .. 1 87 [] 62.6 1.4e-17
CR936257_1867 1/2 142 203 .. 1 87 [] 61.5 2.9e-17
CR936257_0922 1/1 135 196 .. 1 87 [] 58.4 2.1e-16
CR936257_0072 1/1 404 472 .. 1 87 [] 56.8 6e-16
CR936257_2547 1/1 452 513 .. 1 87 [] 54.8 2.3e-15
CR936257_2623 1/1 307 369 .. 1 87 [] 50.9 2.8e-14
CR936257_0363 1/1 303 364 .. 1 87 [] 50.8 3e-14
CR936257_0071 1/1 336 404 .. 1 87 [] 35.8 5.5e-10
CR936257_0429 1/1 503 573 .. 1 87 [] 28.7 5.8e-08

Alignments of top-scoring domains:
CR936257_0750: domain 1 of 1, from 350 to 411: score 67.0, E = 8.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++ +sH+LR+P+++ g++++++e++d
CR936257_0 350 KLDRFASIVSHDLRNPIAVANGHLQIAREDGD--------------- 381

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e+i++++er++++i+d+L l+r + +
CR936257_0 382 ----------EESFERIDESLERMDDIIEDVLALARQDDE 411

CR936257_0309: domain 1 of 1, from 401 to 462: score 62.6, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL + g +elL e ++++++
CR936257_0 401 RLEEFASVVSHDLRNPLRVAAGRLELLAE----------DCDSDH-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++ +r++rLi+dlL l+r +++
CR936257_0 436 -------------IDDIENAHDRMERLIDDLLSLARQGEP 462

CR936257_1867: domain 1 of 2, from 142 to 203: score 61.5, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++sH+LR+PL++ gy++l++e ++e+
CR936257_1 142 RLEAFASTVSHDLRNPLATAHGYLDLARE----------SGDPED-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i++++ r++r+i+d+L l+r +++
CR936257_1 177 -------------FDRIDQSLTRMERIIDDVLWLAREGQE 203

CR936257_0922: domain 1 of 1, from 135 to 196: score 58.4, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sH+LR+PL++ +gy++lL+e++d
CR936257_0 135 RLENFASIVSHDLRNPLNVAQGYIDLLREDVD--------------- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++++++r++ Li++lL+l++ + +
CR936257_0 167 ----------RDELRLVDNALDRMDVLIRELLELAQGGDQ 196

CR936257_0072: domain 1 of 1, from 404 to 472: score 56.8, E = 6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL ++ y++lL+ e+ +++l++e
CR936257_0 404 RLQQFAYVVSHDLQEPLRMVSSYLDLLESEY------SDDLDAEA-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ + + aer++r+i+ lL +sr e+
CR936257_0 443 ----------REYIDFAVDGAERMSRMIDALLSYSRVETR 472

CR936257_2547: domain 1 of 1, from 452 to 513: score 54.8, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +sH+LR+PL++ rg +el++e + ++++
CR936257_2 452 RLETVASVVSHDLRNPLNVARGSLELARE----------TGDDDT-- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ +r++++i+d L l r +a
CR936257_2 487 -------------FGRVADAHDRMESIIDDTLALVRGGAL 513

CR936257_2623: domain 1 of 1, from 307 to 369: score 50.9, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++++sH+LR+PL+a g +el+ e ++ ++e+
CR936257_2 307 RLEEFASHASHDLRNPLSAAAGRLELAIE---------QHGDDED-- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++r++e ++ i+++L+++r+++
CR936257_2 343 -------------LLAVKRSLEDADARIDEMLEFARAGNT 369

CR936257_0363: domain 1 of 1, from 303 to 364: score 50.8, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+L +PL++I+gya+l+ e +++++
CR936257_0 303 RLERFASVISHDLQNPLNVILGYADLAME----------SRDPDD-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i +aer++ ++++l +l +
CR936257_0 338 -------------IERIATAAERMETILEELQTLVQESRA 364

CR936257_0071: domain 1 of 1, from 336 to 404: score 35.8, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ + H+L PL +++++ lL+ e+ ++l++e
CR936257_0 336 ELAQFTHVAYHDLQEPLRMVSAHLTLLESEYG------DDLDAEA-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + aer+++Li+dlL ++r+e+
CR936257_0 375 ----------QASIAHAVTGAERMRQLIDDLLAFARLETD 404

CR936257_0429: domain 1 of 1, from 503 to 573: score 28.7, E = 5.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H+LR+PLt ++g+++ ++ a d++ ++e++
CR936257_0 503 RLQQYGHSVAHDLRNPLTLLKGHLDDFET-----VADDGPVDPETV- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ++r++ Li+dlL+++ ++
CR936257_0 544 ----------ERRCRDAREVVDRMELLIDDLLTMAEQGQR 573


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 15 0|==
-13 50 1|*=====
-12 144 60|======*=========
-11 283 315|================================ *
-10 465 585|==================================================== *
-9 483 604|====================================================== *
-8 394 452|============================================ *
-7 283 285|===============================*
-6 217 164|==================*======
-5 134 90|=========*=====
-4 60 48|=====*=
-3 49 25|==*===
-2 23 13|=*=
-1 12 6|*=
0 8 3|*
1 4 1|*
2 6 0|=
3 2 0|=
4 2 0|=
5 1 0|=
6 0 0|
7 0 0|
8 1 0|=
9 0 0|
10 2 0|=
11 0 0|
> 12 23 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 247.5238
P(chi-square) = 0

Total sequences searched: 2675

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: