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3 accessions found for Natronomonas pharaonis DSM 2160  

Data for CR936257  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CR936257.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 42 0|=====
-12 61 29|===*===
-11 103 243|============ *
-10 342 565|====================================== *
-9 491 642|======================================================= *
-8 359 495|======================================== *
-7 359 311|==================================*=====
-6 270 176|===================*==========
-5 271 94|==========*====================
-4 129 49|=====*=========
-3 96 25|==*========
-2 34 12|=*==
-1 32 6|*===
0 18 3|*=
1 11 1|*=
2 12 0|==
3 3 0|=
4 8 0|=
5 3 0|=
6 3 0|=
7 3 0|=
8 1 0|=
9 2 0|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1119.8373
P(chi-square) = 0

Total sequences searched: 2675

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: