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3 accessions found for Natronomonas pharaonis DSM 2160  

Data for CR936258  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR936258.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR936258_0014 CDS_8959-11118 57.9 1.5e-17 1
CR936258_0097 CDS_89302-91530 48.2 8.4e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR936258_0014 1/1 520 581 .. 1 87 [] 57.9 1.5e-17
CR936258_0097 1/1 531 594 .. 1 87 [] 48.2 8.4e-15

Alignments of top-scoring domains:
CR936258_0014: domain 1 of 1, from 520 to 581: score 57.9, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+L +PL++ +g +el+++e+d
CR936258_0 520 QLDEFASVVSHDLQNPLSVAQGRLELMRTEYD--------------- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++r++ r++ Li+dlL+l+r ++
CR936258_0 552 ----------SEHIASLDRALTRMETLIDDLLTLAREGTR 581

CR936258_0097: domain 1 of 1, from 531 to 594: score 48.2, E = 8.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+P+++ g +el+++ +++
CR936258_0 531 QLDEFASVVSHDLRNPMNVAEGRVELAQM----------ACDCGN-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++ +r+ +L++dlL+l+r +
CR936258_0 566 -----------DHLSDAGDAFDRMHALVDDLLTLARQGDT 594


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 2 0|==
-12 6 2|=*====
-11 15 14|=============*=
-10 26 27|==========================*
-9 21 28|===================== *
-8 18 21|================== *
-7 9 13|========= *
-6 10 7|======*===
-5 4 4|===*
-4 5 2|=*===
-3 3 1|*==
> -2 6 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 4.6264
P(chi-square) = 0.4632

Total sequences searched: 132

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: