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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Pseudoalteromonas haloplanktis TAC125  

Data for CR954246  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR954246.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR954246_1583 CDS_1692017-1688958 98.5 1e-27 1
CR954246_0072 CDS_81793-78431 87.4 1.5e-24 1
CR954246_1112 CDS_1199034-1195711 86.7 2.2e-24 1
CR954246_0706 CDS_770901-768145 85.1 6.3e-24 1
CR954246_0048 CDS_55586-52869 84.3 1.1e-23 1
CR954246_0106 CDS_115918-118746 81.2 8e-23 1
CR954246_0625 CDS_680247-677566 79.8 2.1e-22 1
CR954246_0530 CDS_574033-571259 78.7 4.2e-22 1
CR954246_2329 CDS_2545808-2543853 78.1 6.2e-22 1
CR954246_0570 CDS_625014-626345 76.9 1.3e-21 1
CR954246_2555 CDS_2773762-2769992 74.2 8e-21 1
CR954246_0524 CDS_564020-566338 70.9 7e-20 1
CR954246_0821 CDS_881935-883176 69.0 2.3e-19 1
CR954246_2840 CDS_3088169-3090325 65.1 3.1e-18 1
CR954246_0358 CDS_391489-390098 63.6 7.9e-18 1
CR954246_0096 CDS_103222-105912 58.7 1.9e-16 1
CR954246_0154 CDS_173932-172862 55.6 1.5e-15 1
CR954246_0598 CDS_649357-647222 54.8 2.5e-15 1
CR954246_2138 CDS_2333399-2331948 50.8 3.5e-14 1
CR954246_0591 CDS_641374-642831 49.9 6.1e-14 1
CR954246_2870 CDS_3129138-3125683 49.9 6.1e-14 1
CR954246_2771 CDS_3023911-3022610 49.6 7.2e-14 1
CR954246_2331 CDS_2547781-2546297 48.9 1.2e-13 1
CR954246_0756 CDS_820639-821817 48.7 1.3e-13 1
CR954246_0558 CDS_611721-608281 46.3 6.4e-13 1
CR954246_0827 CDS_889974-888676 38.1 1.3e-10 1
CR954246_2710 CDS_2952664-2954097 34.5 1.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR954246_1583 1/1 514 579 .. 1 87 [] 98.5 1e-27
CR954246_0072 1/1 606 671 .. 1 87 [] 87.4 1.5e-24
CR954246_1112 1/1 537 602 .. 1 87 [] 86.7 2.2e-24
CR954246_0706 1/1 289 354 .. 1 87 [] 85.1 6.3e-24
CR954246_0048 1/1 536 601 .. 1 87 [] 84.3 1.1e-23
CR954246_0106 1/1 477 543 .. 1 87 [] 81.2 8e-23
CR954246_0625 1/1 412 477 .. 1 87 [] 79.8 2.1e-22
CR954246_0530 1/1 277 342 .. 1 87 [] 78.7 4.2e-22
CR954246_2329 1/1 146 211 .. 1 87 [] 78.1 6.2e-22
CR954246_0570 1/1 205 272 .. 1 87 [] 76.9 1.3e-21
CR954246_2555 1/1 659 724 .. 1 87 [] 74.2 8e-21
CR954246_0524 1/1 276 341 .. 1 87 [] 70.9 7e-20
CR954246_0821 1/1 196 261 .. 1 87 [] 69.0 2.3e-19
CR954246_2840 1/1 230 295 .. 1 87 [] 65.1 3.1e-18
CR954246_0358 1/1 244 308 .. 1 87 [] 63.6 7.9e-18
CR954246_0096 1/1 526 591 .. 1 87 [] 58.7 1.9e-16
CR954246_0154 1/1 137 202 .. 1 87 [] 55.6 1.5e-15
CR954246_0598 1/1 489 554 .. 1 87 [] 54.8 2.5e-15
CR954246_2138 1/1 257 321 .. 1 87 [] 50.8 3.5e-14
CR954246_0591 1/1 256 324 .. 1 87 [] 49.9 6.1e-14
CR954246_2870 1/1 796 861 .. 1 87 [] 49.9 6.1e-14
CR954246_2771 1/1 224 284 .. 1 87 [] 49.6 7.2e-14
CR954246_2331 1/1 254 322 .. 1 87 [] 48.9 1.2e-13
CR954246_0756 1/1 166 232 .. 1 87 [] 48.7 1.3e-13
CR954246_0558 1/1 792 857 .. 1 87 [] 46.3 6.4e-13
CR954246_0827 1/1 208 273 .. 1 87 [] 38.1 1.3e-10
CR954246_2710 1/1 256 322 .. 1 87 [] 34.5 1.4e-09

Alignments of top-scoring domains:
CR954246_1583: domain 1 of 1, from 514 to 579: score 98.5, E = 1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHE+RTP+++++g++e+L+e + lse+q
CR954246_1 514 AKSDFVANISHEIRTPMNGVLGMLEMLKE---------DGLSEQQ-- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ + ++a++l +Lind+Ld+s+ieag
CR954246_1 550 ----------HHYLKLANSSANSLMNLINDILDFSKIEAG 579

CR954246_0072: domain 1 of 1, from 606 to 671: score 87.4, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g++ + ++ t+l+ +q
CR954246_0 606 AKSEFLASMSHEIRTPMNGVLGMLNIVKN---------TKLDQQQ-- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++a++ll++ind+Ld+s+ieag
CR954246_0 642 ----------MHHIELAQSSAQSLLNIINDILDFSKIEAG 671

CR954246_1112: domain 1 of 1, from 537 to 602: score 86.7, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+an+sHE+RTP++aI+g+++lL + t+ls eq
CR954246_1 537 AKQSFMANMSHEIRTPMNAIIGFSDLLMD---------TPLSKEQ-- 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l t+ ++a++llrL+n++Ld +++e g
CR954246_1 573 ----------QKHLVTVNNAARSLLRLLNEILDSAKLERG 602

CR954246_0706: domain 1 of 1, from 289 to 354: score 85.1, E = 6.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla +sHELRTPL++++g++ L + t+l+ q
CR954246_0 289 VKSDFLAKMSHELRTPLNGVIGFTRQLHK---------TPLNKNQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a++l +i+d+Ld+s++eag
CR954246_0 325 ----------KDYLDTIELSANSLMTIISDILDFSKLEAG 354

CR954246_0048: domain 1 of 1, from 536 to 601: score 84.3, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL+a++g+++l+++ e ++ ++
CR954246_0 536 AKSQFLANMSHEIRTPLNAVIGFSSLARK----------EDDANTL- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i +++++ll+Lind+Ld+s+ie+
CR954246_0 572 ----------IDYLDKINSSSKSLLNLINDILDISKIESK 601

CR954246_0106: domain 1 of 1, from 477 to 543: score 81.2, E = 8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPLtaI+ ++ L + + ++eq+
CR954246_0 477 VKSQFLANISHEIRTPLTAILSQTDDLIN---------GLYDPEQL- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r++e+l +Lind+Ldls+iea+
CR954246_0 514 ----------QDELKVIQRQSEHLKSLINDVLDLSKIEAN 543

CR954246_0625: domain 1 of 1, from 412 to 477: score 79.8, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPLtaI+g++e Ll + ++ + +
CR954246_0 412 LKSRFLANMSHEIRTPLTAIMGFTEQLLHN--------DKITNNK-- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+tilr +++ll+Lin++Ldls+iea+
CR954246_0 449 -----------QHLSTILRNSKHLLELINNILDLSKIEAE 477

CR954246_0530: domain 1 of 1, from 277 to 342: score 78.7, E = 4.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTP+++++g+++lL+ t+l+ q
CR954246_0 277 AKTTFLATMSHEIRTPMNGVIGTIDLLRQ---------TNLDGSQ-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+++a +ll++++d+Ld+s+ieag
CR954246_0 313 ----------YRLSTIIRESAFSLLSILDDILDFSKIEAG 342

CR954246_2329: domain 1 of 1, from 146 to 211: score 78.1, E = 6.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+lsHELRTPL++++gy+elL ++ s +
CR954246_2 146 SKDRFLAHLSHELRTPLSSVLGYTELLMQ---------SDFSKQA-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r +++ll+L+nd+Ldls+i a
CR954246_2 182 ----------ENELGVIYRNGKHLLSLLNDVLDLSKIAAD 211

CR954246_0570: domain 1 of 1, from 205 to 272: score 76.9, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt++ gy+e++ + ++++
CR954246_0 205 MRKDFVANVSHELRTPLTVVTGYLEMMDS---------DMMPPPA-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +t+l++ +r+++L+ +lL lsrie
CR954246_0 241 --------MWNKAQNTMLEQCKRMDSLVTQLLSLSRIEGA 272

CR954246_2555: domain 1 of 1, from 659 to 724: score 74.2, E = 8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+anlsHE+RTPL+a+ g++++L e + l+++q
CR954246_2 659 AKSRFIANLSHEIRTPLNAVFGLLDMLIE---------QGLTPKQ-- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++a++ll ++n++Ld++r e+
CR954246_2 695 ----------LEQTAQAKHAAHSLLLMLNRMLDFARVESV 724

CR954246_0524: domain 1 of 1, from 276 to 341: score 70.9, E = 7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a+lsHELRTPL++I g++ +Ll+ tel+ +q
CR954246_0 276 DKGKFIATLSHELRTPLNGIVGLTRMLLD---------TELNKQQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +t+ ++ae l ++ nd+ dl +i+ +
CR954246_0 312 ----------RSWCNTVFSSAETLGNIFNDIIDLDKIDRE 341

CR954246_0821: domain 1 of 1, from 196 to 261: score 69.0, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++++sHE+RTPL+ +++++ +L++ l+++
CR954246_0 196 AQQELTSSVSHEFRTPLARLKFAIAMLQD---------RMLDDKA-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++ +++ l++L++++L+++r++++
CR954246_0 232 ----------EKYLANMQVDINELEALVSEMLEYARLDSQ 261

CR954246_2840: domain 1 of 1, from 230 to 295: score 65.1, E = 3.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fl+++sHE+RTPL++I+g a+l + ++ ++
CR954246_2 230 IRGLFLSTISHEIRTPLNGILGSAQLVMN---------QTSDARN-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y e i+++ae+l+ L++ +Ld++ +++
CR954246_2 266 ----------KAYCEAIINSAESLNLLVDKVLDYASLDQS 295

CR954246_0358: domain 1 of 1, from 244 to 308: score 63.6, E = 7.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++la++sHELR PLt +++++ l+++ ++e
CR954246_0 244 AQKRLLADISHELRSPLTRLKMATGLAQM----------QANEAS-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i++ea++l+++i d+L+ sr+ea+
CR954246_0 279 ----------QSYLLRIEKEANQLDKMIADVLQVSRLEAN 308

CR954246_0096: domain 1 of 1, from 526 to 591: score 58.7, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE RTP+++I+g+ l+l ++ +
CR954246_0 526 IKSQFLANMSHEVRTPINGIKGLHYLALQ---------QNDWQQA-- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e ++ ++ llr +ndlLd+s++eag
CR954246_0 562 ----------RTYIEQADGALGVLLRVLNDLLDFSKMEAG 591

CR954246_0154: domain 1 of 1, from 137 to 202: score 55.6, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++l+HE+++PL +Irg+a+lL+ e + ++r
CR954246_0 137 AARNLIRGLAHEIKNPLGGIRGAAQLLQY----------EVDQQER- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e i+++a+rl++L+++lL ++ +
CR954246_0 173 ----------NECAELIIEQADRLRELVDRLLGPNQLPQK 202

CR954246_0598: domain 1 of 1, from 489 to 554: score 54.8, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L++ +++se
CR954246_0 489 YLENMSSRLSHELRTPVAVVRSSLENLQM---------QPQSELS-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ + +erl ++i + + +r+e+
CR954246_0 525 ----------QKYLDRASEGVERLGKIITTMSEATRLEQS 554

CR954246_2138: domain 1 of 1, from 257 to 321: score 50.8, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++lan+sHELRTP++ ++g +e++l + + +
CR954246_2 257 VRKRWLANISHELRTPMSILLGELEAMLL---------GIREPNA-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +ea +l rLi+dl l +e g
CR954246_2 293 -----------KNINSANDEALHLKRLIDDLHMLNSAELG 321

CR954246_0591: domain 1 of 1, from 256 to 324: score 49.9, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+++ HEL+TPL+++ ++lL + + ++ + eq
CR954246_0 256 QKDTFLRHVTHELKTPLASMVEGTDLLSD------EIVGPITKEQ-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i ++ rl+ +i+ lL + i++
CR954246_0 295 ----------RAVLELISQSMVRLRTMIDSLLSYNAIRTS 324

CR954246_2870: domain 1 of 1, from 796 to 861: score 49.9, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+a++sH+L +P +a +++++l+ e ++s+e
CR954246_2 796 SKTRFFAAASHDLLQPFNAASLFCSLMNE---------KAQSSEL-- 831

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + ++L++ +L+l+++++g
CR954246_2 832 ----------KALALNIKNSLGSAEELLSSILELTKLDSG 861

CR954246_2771: domain 1 of 1, from 224 to 284: score 49.6, E = 7.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
CR954246_2 224 DRRLLMAGVSHDLRTPLTRIRLATEMMAD--------------ED-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i+ ++e ++ +i+++ ++ r
CR954246_2 255 ----------DYLREGIIYDIEDMNGIIDQFIEYLRHHKR 284

CR954246_2331: domain 1 of 1, from 254 to 322: score 48.9, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+L PL I+++++ L++ + +el+e+
CR954246_2 254 ELEEFAFVASHDLQEPLRKIQAFSDRLETMFK------DELGEKG-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ +++++a+r+++LindlL++sri +
CR954246_2 293 ----------MDYIARMKNAAQRMSNLINDLLEFSRITTR 322

CR954246_0756: domain 1 of 1, from 166 to 232: score 48.7, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya L l+e r
CR954246_0 166 ALGKMVASLAHQVRTPLSAAMLYAANLGS---------KRLPEASR- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + ++ l++++nd+L +++ + +
CR954246_0 203 ----------DNFQTKLMSRLKDLENQVNDMLLFAKSGDQ 232

CR954246_0558: domain 1 of 1, from 792 to 857: score 46.3, E = 6.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla +sH++ +PL+a r+y+ ++ e l++
CR954246_0 792 SKTRFLALASHDILQPLNAARLYLAAIDE---------KQLNSTN-- 827

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ +++++ +L + lL+++++e+g
CR954246_0 828 ----------QNNLDKLGDSLDSTVHLMSALLEIAKLEQG 857

CR954246_0827: domain 1 of 1, from 208 to 273: score 38.1, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++lsH++RTP++ +r+ ++++ + ++ ++
CR954246_0 208 ENKLMASSLSHDIRTPIACLRFGLDAAID---------SNDMPKV-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +++++++++++++ L ++ +e++
CR954246_0 244 ----------KQYLTRMENDLDHMESMLKSYLAFATLEQN 273

CR954246_2710: domain 1 of 1, from 256 to 322: score 34.5, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++HEL+TP++ ++ ++e++l+ ++ d s
CR954246_2 256 NEKRLTSDIAHELKTPIAELISLSEVALK-----YPDDKRIS----- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ +l+ +er+ ++n+lL l r +
CR954246_2 293 ----------DTYTSDVLSISERMKTIVNNLLLLQRSTSS 322


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 22 0|===
-13 58 2|*=====
-12 146 67|======*========
-11 301 348|=============================== *
-10 506 646|=================================================== *
-9 534 667|====================================================== *
-8 479 499|================================================ *
-7 376 315|===============================*======
-6 201 181|==================*==
-5 124 99|=========*===
-4 73 53|=====*==
-3 41 28|==*==
-2 17 14|=*
-1 12 7|*=
0 11 4|*=
1 4 2|*
> 2 33 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 193.0367
P(chi-square) = 2.065e-35

Total sequences searched: 2941

Whole sequence top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: