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Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Pseudoalteromonas haloplanktis TAC125  

Data for CR954246  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CR954246.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR954246_1551 CDS_1657629-1659230 37.7 5.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR954246_1551 1/1 340 404 .. 1 70 [] 37.7 5.7e-11

Alignments of top-scoring domains:
CR954246_1551: domain 1 of 1, from 340 to 404: score 37.7, E = 5.7e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+++++ELHD++gQ+L+a+k l+ + ++ kd + ++ +
CR954246_1 340 ERKHLSQELHDELGQNLTALKTDLSILSHMS--NKD---TQSFVKSL 381

relarealaevRrllgdLRpaal<-*
++ a++ ++ v +l + LRp +l
CR954246_1 382 KTNANTMYDSVYQLMHYLRPREL 404


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 25 0|===
-13 121 0|===========
-12 176 32|==*=============
-11 245 269|======================= *
-10 618 625|========================================================*
-9 599 709|======================================================= *
-8 401 547|===================================== *
-7 297 344|=========================== *
-6 177 194|=================*
-5 132 104|=========*==
-4 55 54|====*
-3 39 28|==*=
-2 25 14|=*=
-1 16 7|*=
0 9 3|*
1 1 1|*
2 2 0|=
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 720.7410
P(chi-square) = 0

Total sequences searched: 2941

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: