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Classification of phyla is from NCBI page
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2 accessions found for Pseudoalteromonas haloplanktis TAC125  

Data for CR954247  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CR954247.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CR954247_0265 CDS_320434-323217 77.2 2.1e-22 1
CR954247_0279 CDS_335549-340306 75.0 8.5e-22 1
CR954247_0156 CDS_201780-200464 58.4 4.4e-17 1
CR954247_0013 CDS_16896-18257 57.7 6.9e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CR954247_0265 1/1 563 629 .. 1 87 [] 77.2 2.1e-22
CR954247_0279 1/1 1068 1133 .. 1 87 [] 75.0 8.5e-22
CR954247_0156 1/1 225 289 .. 1 87 [] 58.4 4.4e-17
CR954247_0013 1/1 231 297 .. 1 87 [] 57.7 6.9e-17

Alignments of top-scoring domains:
CR954247_0265: domain 1 of 1, from 563 to 629: score 77.2, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL++I+g+++lL ++ ++ +++
CR954247_0 563 TKSLFLANMSHEIRTPLNGILGMTQLLIKN--------SKIAADE-- 599

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i+++a+ ll ++n++Ld+s+iea+
CR954247_0 600 ----------QNELQMIQQSAHNLLLILNEILDFSKIEAN 629

CR954247_0279: domain 1 of 1, from 1068 to 1133: score 75.0, E = 8.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g++el++ e+ +++ e++
CR954247_0 1068 AKSQFLATMSHEIRTPMNGVLGMLELIQLEQ-------LPKPIETK- 1106

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +a++ll ind+Ld+s++eag
CR954247_0 1107 -------------VAIAKTSAHSLLGVINDILDFSKAEAG 1133

CR954247_0156: domain 1 of 1, from 225 to 289: score 58.4, E = 4.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++n++HELRTPL++I++ ++l++ ++++ q
CR954247_0 225 REKHFTSNAAHELRTPLAGILAQIQLAEL----------TQDATQ-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++a+rl+ ++++lL l+ +a
CR954247_0 260 ----------QKALGQAKKSAHRLNTILDNLLVLAHVDAD 289

CR954247_0013: domain 1 of 1, from 231 to 297: score 57.7, E = 6.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f +++HELRTPLt I++ +++ l+ ++ q
CR954247_0 231 RLSNFSTDIAHELRTPLTNIITQTQVGLT---------KQRDLVQ-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l + l+e+erl ++++d+L l++ ++g
CR954247_0 267 ---------YQELLFSNLEELERLTKMVSDMLWLAKTQNG 297


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 3 0|==
-13 7 0|====
-12 23 12|=====*======
-11 61 64|===============================*
-10 103 120|==================================================== *
-9 103 123|==================================================== *
-8 90 92|=============================================*
-7 67 58|============================*=====
-6 38 33|================*==
-5 23 18|========*===
-4 10 9|====*
-3 5 5|==*
-2 2 2|*
-1 2 1|*
0 1 0|=
> 1 8 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 18.0613
P(chi-square) = 0.03447

Total sequences searched: 546

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: