Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Frankia alni ACN14a  

Data for CT573213  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CT573213.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CT573213_5852 CDS_6508213-6506753 109.2 1.2e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CT573213_5852 1/1 292 360 .. 1 75 [. 109.2 1.2e-30

Alignments of top-scoring domains:
CT573213_5852: domain 1 of 1, from 292 to 360: score 109.2, E = 1.2e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ r++k e+ + aLrEs++RV S
CT573213_5 292 EIHHRVKNNLQTVAALLRLQMRRTKVDEA-----RSALRESVRRVTS 333

mAliHEeLYksedldtvdfseYlekLte<-*
+A +HE L++s + ++v f+e + +t+
CT573213_5 334 IAVVHETLSQSLG-ESVPFDEIADQITS 360


Histogram of all scores:
score obs exp (one = represents 32 sequences)
----- --- ---
-15 47 0|==
-14 134 0|=====
-13 228 42|=*======
-12 573 440|=============*====
-11 1880 1227|======================================*====================
-10 1475 1588|=============================================== *
-9 897 1341|============================= *
-8 703 899|====================== *
-7 318 534|========== *
-6 271 297|=========*
-5 76 160|=== *
-4 51 84|==*
-3 26 44|=*
-2 16 23|*
-1 11 12|*
0 1 6|*
1 2 3|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1566.5469
P(chi-square) = 0

Total sequences searched: 6723

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: