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Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Synechococcus sp. WH 7803  

Data for CT971583  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CT971583.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CT971583_2272 CDS_2096644-2093969 92.4 4.8e-26 1
CT971583_1963 CDS_1794887-1796932 81.1 7.8e-23 1
CT971583_1788 CDS_1639857-1638394 73.8 9e-21 1
CT971583_1546 CDS_1423270-1424421 71.7 3.4e-20 1
CT971583_1786 CDS_1636666-1638075 69.0 2e-19 1
CT971583_1794 CDS_1644016-1642730 68.0 3.9e-19 1
CT971583_1386 CDS_1273033-1271873 52.7 8.4e-15 1
CT971583_0290 CDS_316748-315603 50.9 2.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CT971583_2272 1/1 372 440 .. 1 87 [] 92.4 4.8e-26
CT971583_1963 1/1 418 486 .. 1 87 [] 81.1 7.8e-23
CT971583_1788 1/1 251 318 .. 1 87 [] 73.8 9e-21
CT971583_1546 1/1 158 222 .. 1 87 [] 71.7 3.4e-20
CT971583_1786 1/1 248 315 .. 1 87 [] 69.0 2e-19
CT971583_1794 1/1 207 272 .. 1 87 [] 68.0 3.9e-19
CT971583_1386 1/1 154 220 .. 1 87 [] 52.7 8.4e-15
CT971583_0290 1/1 130 196 .. 1 87 [] 50.9 2.8e-14

Alignments of top-scoring domains:
CT971583_2272: domain 1 of 1, from 372 to 440: score 92.4, E = 4.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTP++aI+gy+e+L ee+ +el + +
CT971583_2 372 AKSEFLANMSHELRTPMNAIIGYSEMLIEES-------EELEPSD-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+il+++++ll Lin +Ldls+ieag
CT971583_2 410 ---------FVVDLEKILSSGRHLLGLINGVLDLSKIEAG 440

CT971583_1963: domain 1 of 1, from 418 to 486: score 81.1, E = 7.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L + + + ls+e+r
CT971583_1 418 AQSRFISNVSHELRTPLFNIKSYVETLHDMG-------DLLSDEDR- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ e++rl rL+nd+Ldlsr+e+
CT971583_1 457 ----------QEFLGIANAETDRLTRLVNDVLDLSRLESS 486

CT971583_1788: domain 1 of 1, from 251 to 318: score 73.8, E = 9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELR+P+t I gy+ Ll+++ ++lseeq
CT971583_1 251 RQRQFASTVSHELRNPITLIAGYSRRLLRRS-------HNLSEEQ-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ++++e++rl rL+ lL ++r+e+g
CT971583_1 289 ----------RHQLAIVEEESRRLGRLVTGLLAITRAETG 318

CT971583_1546: domain 1 of 1, from 158 to 222: score 71.7, E = 3.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++++HEL+TPLta+++ ++ L+ + se++
CT971583_1 158 QQERWVSDVAHELKTPLTALMLVSDRLEG----------AVSEDD-- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+++re++rl+ +++dlL+lsr+e+
CT971583_1 193 ----------GVLVERLQRELRRLQLMVEDLLELSRLENI 222

CT971583_1786: domain 1 of 1, from 248 to 315: score 69.0, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHEL TPLt ++g ++ +++ ++l++
CT971583_1 248 QQRQFVSAVSHELQTPLTLVSGSLKRVMRKA-------PDLDPAL-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +++e+ +++L+ndlLdlsr ++g
CT971583_1 286 ----------RQRLQDAQDETTDMQQLLNDLLDLSRSDSG 315

CT971583_1794: domain 1 of 1, from 207 to 272: score 68.0, E = 3.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ +++HELRTP+t+I+g+++ L++ + ls++
CT971583_1 207 RERSFVDGVAHELRTPITVISGHSQRLQR---------QVLSDPA-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i ea+r+ +L+ l++l+r +ag
CT971583_1 243 ----------RDSVNSITGEARRMGQLLTSLRELARCDAG 272

CT971583_1386: domain 1 of 1, from 154 to 220: score 52.7, E = 8.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +l+HELRTPL+ + g + L++ ++l +
CT971583_1 154 QQRAFINTLAHELRTPLAILTGSLRRLER--------KSDLAQPL-- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++e++r+ +L++ lL ls +++
CT971583_1 191 ----------DRALGDAIDETKRMAALVDKLLILSELDTD 220

CT971583_0290: domain 1 of 1, from 130 to 196: score 50.9, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ l+ + H+LR+PLta+r+ya+lLl+ +++q+
CT971583_0 130 AQRQQLSVMVHQLRNPLTALRTYAQLLLR---------RLGPDDQQ- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e ++re l+r + l + r e
CT971583_0 167 ----------RPLVENLIREQVELDRYVTSLDRIGREELR 196


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 11 0|==
-13 40 1|*====
-12 130 57|=======*=========
-11 242 300|=============================== *
-10 438 557|======================================================= *
-9 460 575|==========================================================*
-8 413 430|==================================================== *
-7 292 271|=================================*===
-6 206 156|===================*======
-5 117 85|==========*====
-4 73 45|=====*====
-3 51 24|==*====
-2 16 12|=*
-1 13 6|*=
0 9 3|*=
1 5 1|*
2 1 0|=
3 2 0|=
4 1 0|=
> 5 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 231.8339
P(chi-square) = 3.316e-313

Total sequences searched: 2533

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: