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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Synechococcus sp. RCC307  

Data for CT978603  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CT978603.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CT978603_1823 CDS_1586479-1588413 80.8 9e-23 1
CT978603_2410 CDS_2106404-2104950 71.4 4.3e-20 1
CT978603_1120 CDS_986558-988066 69.7 1.3e-19 1
CT978603_0778 CDS_709473-708370 69.6 1.4e-19 1
CT978603_0565 CDS_499851-500942 45.6 8.6e-13 1
CT978603_2313 CDS_2012643-2011537 34.1 1.5e-09 1
CT978603_0762 CDS_691873-690761 30.3 1.9e-08 1
CT978603_2086 CDS_1802490-1803827 28.5 6.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CT978603_1823 1/1 388 456 .. 1 87 [] 80.8 9e-23
CT978603_2410 1/1 260 327 .. 1 87 [] 71.4 4.3e-20
CT978603_1120 1/1 276 343 .. 1 87 [] 69.7 1.3e-19
CT978603_0778 1/1 141 205 .. 1 87 [] 69.6 1.4e-19
CT978603_0565 1/1 135 202 .. 1 87 [] 45.6 8.6e-13
CT978603_2313 1/1 136 191 .. 9 87 .] 34.1 1.5e-09
CT978603_0762 1/1 146 202 .. 1 80 [. 30.3 1.9e-08
CT978603_2086 1/1 219 265 .. 1 67 [. 28.5 6.1e-08

Alignments of top-scoring domains:
CT978603_1823: domain 1 of 1, from 388 to 456: score 80.8, E = 9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L + + + l+ee +
CT978603_1 388 AQSRFISNVSHELRTPLFNIKSYVETLHDMG-------DQLDEEMT- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l t+ e++rl rL+nd+Ldlsr+e+
CT978603_1 427 ----------REFLATANAETDRLTRLVNDVLDLSRLESD 456

CT978603_2410: domain 1 of 1, from 260 to 327: score 71.4, E = 4.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHE+RTPLt+++g+++ l+ + + + +
CT978603_2 260 NQKQFASTISHEFRTPLTVVSGFIQSVLN---------RADDLKPQ- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l ++ +ea rl+r+++dlLdlsr+++
CT978603_2 297 ---------FRDALTVANQEALRLNRMLSDLLDLSRADNR 327

CT978603_1120: domain 1 of 1, from 276 to 343: score 69.7, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt + gy++ l+ + ++l + q
CT978603_1 276 HQRQFVSAVSHELRTPLTIVGGYIKRTLRTG-------DTLEASQ-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t+++e+ r+++L++dlLdlsr ++g
CT978603_1 314 ----------RKGLQTAEQETLRMRHLLDDLLDLSRGDSG 343

CT978603_0778: domain 1 of 1, from 141 to 205: score 69.6, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HELRTPLta+++ +e+L + +++q
CT978603_0 141 LHQRWVSDVAHELRTPLTALSLVTETLAL----------NPDPKQ-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+++re++rl++L+ dlL+l r+e+
CT978603_0 176 ----------EVQIERLQRELNRLQQLVADLLELNRLESS 205

CT978603_0565: domain 1 of 1, from 135 to 202: score 45.6, E = 8.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ l+HEL+TPL+ + g + L ++l + ++
CT978603_0 135 QQRQFVNQLAHELNTPLAIVNGSLRQLGKKL-------LNFGDGS-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ +++e+ rl rL++ lL l+ +e+g
CT978603_0 173 ----------RERLRQAQQETSRLVRLLRHLLVLTDLETG 202

CT978603_2313: domain 1 of 1, from 136 to 191: score 34.1, E = 1.5e-09
*->lsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledp
l H++R+PL+a+r++++lLl+++ e+s+e
CT978603_2 136 LVHQMRNPLAALRTFTQLLLRRV--------EASDER---------- 164

eyreyletilreaerllrLindlLdlsrieag<-*
re++e +l+e ++l ++ l s eag
CT978603_2 165 --RELVEHLLDEQQSLAGYLDAL---SSSEAG 191

CT978603_0762: domain 1 of 1, from 146 to 202: score 30.3, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++++HELRTPLta ++++ + e+ ++
CT978603_0 146 VQERLLRMVAHELRTPLTAANLALQSYRLEQ-----------IKT-- 179

peLRledpeyreyletilreaerllrLindlLd<-*
+++++++r +e +++L dlL+
CT978603_0 180 ----------DRFFDVMDRRLEDIEQLSHDLLE 202

CT978603_2086: domain 1 of 1, from 219 to 265: score 28.5, E = 6.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +++HE RTPL++Ir+++ L++ +++ls++
CT978603_2 219 QQLGLLEAIAHEVRTPLATIRTLIRSLQR--------RSDLSPPL-- 255

peLRledpeyreyletilre<-*
++ l i++e
CT978603_2 256 ----------QKRLGQIDHE 265


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 20 0|===
-13 51 1|*======
-12 135 57|=======*=========
-11 243 300|=============================== *
-10 444 557|======================================================== *
-9 454 575|========================================================= *
-8 419 431|=====================================================*
-7 296 271|=================================*===
-6 193 156|===================*=====
-5 122 85|==========*=====
-4 60 45|=====*==
-3 33 24|==*==
-2 22 12|=*=
-1 16 6|*=
0 7 3|*
1 3 1|*
2 3 0|=
3 2 0|=
> 4 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 216.1761
P(chi-square) = 6.117e-310

Total sequences searched: 2535

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: