Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Herminiimonas arsenicoxydans  

Data for CU207211  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU207211.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU207211_0841 CDS_903938-905620 89.9 3.2e-25 1
CU207211_1385 CDS_1467074-1468807 78.6 5.1e-22 1
CU207211_1052 CDS_1132857-1134149 78.5 5.3e-22 1
CU207211_1543 CDS_1620515-1617750 74.6 7e-21 1
CU207211_0893 CDS_954133-955206 66.2 1.7e-18 1
CU207211_0871 CDS_931050-932441 63.2 1.1e-17 1
CU207211_2513 CDS_2602150-2603688 62.7 1.7e-17 1
CU207211_2570 CDS_2660374-2659028 62.6 1.7e-17 1
CU207211_0565 CDS_605567-606970 60.7 6e-17 1
CU207211_2650 CDS_2750433-2748832 60.3 7.8e-17 1
CU207211_0126 CDS_128157-125854 57.0 6.9e-16 1
CU207211_0506 CDS_541869-540421 56.2 1.1e-15 1
CU207211_1477 CDS_1542964-1544340 55.8 1.5e-15 1
CU207211_2000 CDS_2105968-2107260 55.0 2.5e-15 1
CU207211_0281 CDS_289160-290566 53.8 5.3e-15 1
CU207211_2802 CDS_2899841-2901085 50.7 4e-14 1
CU207211_2852 CDS_2946797-2948014 49.6 8.5e-14 1
CU207211_0041 CDS_42404-41307 44.3 2.6e-12 1
CU207211_3313 CDS_3403813-3405849 43.5 4.5e-12 1
CU207211_1818 CDS_1918428-1919795 42.4 9.5e-12 1
CU207211_0392 CDS_410489-408690 41.3 1.9e-11 1
CU207211_0046 CDS_50007-48721 37.0 3.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU207211_0841 1/1 188 253 .. 1 87 [] 89.9 3.2e-25
CU207211_1385 1/1 125 191 .. 1 87 [] 78.6 5.1e-22
CU207211_1052 1/1 205 272 .. 1 87 [] 78.5 5.3e-22
CU207211_1543 1/1 684 751 .. 1 87 [] 74.6 7e-21
CU207211_0893 1/1 130 198 .. 1 87 [] 66.2 1.7e-18
CU207211_0871 1/1 241 309 .. 1 87 [] 63.2 1.1e-17
CU207211_2513 1/1 274 339 .. 1 87 [] 62.7 1.7e-17
CU207211_2570 1/1 225 290 .. 1 87 [] 62.6 1.7e-17
CU207211_0565 1/1 248 314 .. 1 87 [] 60.7 6e-17
CU207211_2650 1/1 312 377 .. 1 87 [] 60.3 7.8e-17
CU207211_0126 1/1 532 604 .. 1 87 [] 57.0 6.9e-16
CU207211_0506 1/1 252 318 .. 1 87 [] 56.2 1.1e-15
CU207211_1477 1/1 235 301 .. 1 87 [] 55.8 1.5e-15
CU207211_2000 1/1 180 245 .. 1 87 [] 55.0 2.5e-15
CU207211_0281 1/1 105 171 .. 1 87 [] 53.8 5.3e-15
CU207211_2802 1/1 201 267 .. 1 87 [] 50.7 4e-14
CU207211_2852 1/1 199 260 .. 1 87 [] 49.6 8.5e-14
CU207211_0041 1/1 138 204 .. 1 87 [] 44.3 2.6e-12
CU207211_3313 1/1 458 525 .. 1 87 [] 43.5 4.5e-12
CU207211_1818 1/1 234 293 .. 1 87 [] 42.4 9.5e-12
CU207211_0392 1/1 356 431 .. 1 87 [] 41.3 1.9e-11
CU207211_0046 1/1 201 267 .. 1 87 [] 37.0 3.1e-10

Alignments of top-scoring domains:
CU207211_0841: domain 1 of 1, from 188 to 253: score 89.9, E = 3.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla +sHE+RTP+++++g+ +l+l+ ++ + eq
CU207211_0 188 AKSEFLAVMSHEIRTPMNGMLGMMQLALA---------QASDVEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reylet++ +ae ll ++nd+Ld+s++e+g
CU207211_0 224 ----------REYLETAQYSAEALLTILNDILDFSKLESG 253

CU207211_1385: domain 1 of 1, from 125 to 191: score 78.6, E = 5.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ +a++sHELR PL++I+gy+++Ll++ ++l +
CU207211_1 125 AKTRYVAGISHELRSPLNSILGYSQILLKN--------EHLAAAP-- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ti+r++e+ll L+++lLdl+riea
CU207211_1 162 ----------RTAIQTIHRSGEHLLGLVDELLDLARIEAD 191

CU207211_1052: domain 1 of 1, from 205 to 272: score 78.5, E = 5.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I g++e++++ ++l+ r
CU207211_1 205 MRRDFIANASHELRTPLTVINGFLEIAQA--------QPDLDQAIR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++++++r+++L++d+L+l+r+e+
CU207211_1 243 ----------MSHLKLMIEQGQRMQNLVEDMLTLTRLESI 272

CU207211_1543: domain 1 of 1, from 684 to 751: score 74.6, E = 7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g++e L + + ++l++ q
CU207211_1 684 LRNSLLSALSHDLRTPLTSLVGLSESLTM-------SKPPLTSSQ-- 721

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + +++ea+r+++L+++lLd++ri++g
CU207211_1 722 ----------QELAQALHDEARRMSNLVSNLLDMARIQSG 751

CU207211_0893: domain 1 of 1, from 130 to 198: score 66.2, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL+ el +e+ +++
CU207211_0 130 ANKELIRNLAHEIKNPLGGIRGAAQLLELEL-------PERHVKEL- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++ea+rl+ L+++lL r +
CU207211_0 169 ----------REYTQVIIKEADRLQTLVDRLLAPHRSLHI 198

CU207211_0871: domain 1 of 1, from 241 to 309: score 63.2, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL aI gy+ + +e++ + l++e
CU207211_0 241 ELESFSYSVSHDLRSPLRAIDGYSRMFEEDFA------DRLDDEG-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+ +++ + +Li+dlL +sr++
CU207211_0 280 ----------RRLLSVIRVSSKKMGQLIDDLLAFSRMGRK 309

CU207211_2513: domain 1 of 1, from 274 to 339: score 62.7, E = 1.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ +el+l+ ++ +e
CU207211_2 274 VQKRFIADAAHQMKTPLAGMRMQSELALR---------QTDHAEI-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le + +++++ r++n+lL l+r+e++
CU207211_2 310 ----------HKSLEQLAKSSKSATRMVNQLLALARAENQ 339

CU207211_2570: domain 1 of 1, from 225 to 290: score 62.6, E = 1.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+ +H+LRTP++++++++el+l+ e + q+
CU207211_2 225 FQGRFIADTAHQLRTPVAGLKAHIELALR----------ENDLTQV- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +aerl+rL+++lL l+r e +
CU207211_2 261 ----------KRALGHLYTSAERLSRLVSQLLSLARNEPN 290

CU207211_0565: domain 1 of 1, from 248 to 314: score 60.7, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HE+RTP+t+++g ++++l ++s+++
CU207211_0 248 RLSQFSTDLAHEFRTPVTSLLGQSQVALG---------RPRSADE-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++++ + +e+erl+r+i+ +L l+r e +
CU207211_0 284 ---------YKQLVISNMEELERLSRMIDSMLFLARVERE 314

CU207211_2650: domain 1 of 1, from 312 to 377: score 60.3, E = 7.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE R+PL+aI +a+lL e +el++
CU207211_2 312 SMGRLTASIAHEVRNPLSAIGHAASLLSE---------EELNASR-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i + + rl+r+i+d+L lsr ++
CU207211_2 348 ----------QRLLTIISENVARLNRMIEDILKLSRKAHQ 377

CU207211_0126: domain 1 of 1, from 532 to 604: score 57.0, E = 6.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l+ ++l+e++++
CU207211_0 532 AWGEVARRLAHEIKNPLTPIQLSAERLQMKLE------GKLNEQDAR 572

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ti +++ ++r+++d++d+++
CU207211_0 573 IL--------ERSTATIVNQVSAMQRMVDDFRDYAKTPPA 604

CU207211_0506: domain 1 of 1, from 252 to 318: score 56.2, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f a+++HELRTP+t +++ ++++l + +s+++
CU207211_0 252 KLANFSADIAHELRTPVTNLSTQTQVALS---------QVRSADE-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre l + l+e +rl+ +i d+L l++ e+
CU207211_0 288 ---------YREVLYSNLEEFDRLSLMIGDMLFLAQTEND 318

CU207211_1477: domain 1 of 1, from 235 to 301: score 55.8, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef a+l+HELRTP++ +++ +++ l+ + +s +
CU207211_1 235 RLTEFSADLAHELRTPISNMLTQTHVVLN---------QSRSTAD-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l++ +e++rl + i+d+L l++ e+g
CU207211_1 271 ---------YRDSLSSNAEELQRLGNTISDMLFLAQTENG 301

CU207211_2000: domain 1 of 1, from 180 to 245: score 55.0, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTPLta+++ ++l ++ e ++ qr
CU207211_2 180 TQRAFVADAAHELRTPLTALKLQLQLVER----------ENDDRQR- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ ++r +L+++lL+l+r e
CU207211_2 216 ----------ATGFRKLHERLNRATHLVQQLLTLARHEYR 245

CU207211_0281: domain 1 of 1, from 105 to 171: score 53.8, E = 5.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efl++l+HELR PL+ I ++a+lL + + t+ +
CU207211_0 105 RQEEFLSMLAHELRSPLAPIAMAADLLGK-------ITTAHPMLP-- 142

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i r++ ++ +L++dlLd sr +g
CU207211_0 143 -----------KLYGIISRQVGHMAHLVDDLLDASRVSTG 171

CU207211_2802: domain 1 of 1, from 201 to 267: score 50.7, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I g+aelLle +++ + +
CU207211_2 201 RERFFTGDVSHELRTPLTIITGAAELLLE---------QTAAQPAL- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ilr+a+ ++ ++ lL+l+r+ +
CU207211_2 238 ----------HAPADRILRAAKEANECVEILLQLARAPDQ 267

CU207211_2852: domain 1 of 1, from 199 to 260: score 49.6, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +lan+sHELR PL+ Ir+++el+ + q
CU207211_2 199 AQKALLANASHELRSPLARIRMAIELMGP-------------AAQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + ++r + l++Li+++L sr++a
CU207211_2 231 ----------PEIRSELKRNIGELDQLIDEILLASRLDAT 260

CU207211_0041: domain 1 of 1, from 138 to 204: score 44.3, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fla l H+LR PL+a+ ++ + L + + e +
CU207211_0 138 TRDTFLAILGHDLRSPLAAMAMAGHYLAL---------PGVGTEAT- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++r+a + +++nd+L+++r + g
CU207211_0 175 ----------LRVGSRVKRSAATMTAMVNDMLEYARGQLG 204

CU207211_3313: domain 1 of 1, from 458 to 525: score 43.5, E = 4.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e +a+++HE+++P+++++g++++L++ l +++ +
CU207211_3 458 AIGEITAGVAHEINNPVAVLQGNLDVLRDTL-------GAAATPV-- 495

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++++++r++ ++ lL+++ ++
CU207211_3 496 ----------QGELRLMDQQIHRINTIVTKLLQFASPGEF 525

CU207211_1818: domain 1 of 1, from 234 to 293: score 42.4, E = 9.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la++sH+LRTPL+ +++ +e+ + l+++
CU207211_1 234 DRAVVLAGISHDLRTPLARMQLEVEM------------AGLPDDA-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++e+++++i ++Ld+++
CU207211_1 267 -------------RKGMQSDLEQMDAIIGQFLDYAKPVDS 293

CU207211_0392: domain 1 of 1, from 356 to 431: score 41.3, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +++l+HEL++PL+aI+ y+ +l+ +la+++++ + ++
CU207211_0 356 TMGEIASTLAHELNQPLAAISSYTTGALN----LLASEQPKEATINI 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+L ++le++ +a+r ++i+ + ++ + +++
CU207211_0 399 EML-------TQALEKANAQAQRAGQIIRSVHTFVKKREP 431

CU207211_0046: domain 1 of 1, from 201 to 267: score 37.0, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f+ ++sHELRTPLt ++g++elL+ + ++s+++
CU207211_0 201 DEKLFTGDVSHELRTPLTIVLGASELLKV--------RLAQSPDE-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i+r a ++ ++ lL ls+ +
CU207211_0 238 ----------LLIAERIRRVAAEASERVSALLLLSQSPET 267


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-16 1 0|=
-15 3 0|=
-14 15 0|==
-13 69 2|*======
-12 173 75|======*=========
-11 304 394|============================ *
-10 568 731|==================================================== *
-9 633 755|==========================================================*
-8 588 565|===================================================*==
-7 366 356|================================*=
-6 260 205|==================*=====
-5 141 112|==========*==
-4 70 60|=====*=
-3 44 31|==*=
-2 26 16|=*=
-1 16 8|*=
0 9 4|*
1 7 2|*
2 2 1|*
3 0 0|
> 4 30 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 241.3021
P(chi-square) = 2.652e-315

Total sequences searched: 3333

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: