Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Herminiimonas arsenicoxydans  

Data for CU207211  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CU207211.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU207211_1774 CDS_1880469-1881905 70.1 1.9e-20 1
CU207211_1570 CDS_1651279-1653297 60.2 1.5e-17 1
CU207211_2408 CDS_2499326-2497224 36.0 2.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU207211_1774 1/1 278 345 .. 1 70 [] 70.1 1.9e-20
CU207211_1570 1/1 468 536 .. 1 70 [] 60.2 1.5e-17
CU207211_2408 1/1 487 549 .. 1 59 [. 36.0 2.1e-10

Alignments of top-scoring domains:
CU207211_1774: domain 1 of 1, from 278 to 345: score 70.1, E = 1.9e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER++IARE+HD +g +L+aik+ l l+ r+l ++ + e+ e +d +
CU207211_1 278 ERTHIAREIHDDLGGNLTAIKMALALLTRRL--PRKNVELIEKADYV 322

relarealaevRrllgdLRpaal<-*
+ l++++++ v r++g+LRp++l
CU207211_1 323 ESLVDRTIESVHRIAGNLRPGIL 345

CU207211_1570: domain 1 of 1, from 468 to 536: score 60.2, E = 1.5e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ A+ LHDs++Q+L+ ++lq++++ l +k +e++e + +
CU207211_1 468 ERNLVAQGLHDSIAQGLTFLNLQVQMLDDSL--QKGRLkEVAEIVPA 512

irelarealaevRrllgdLRpaal<-*
+r+ ++e+++++R+ll ++R
CU207211_1 513 LRAGVNESYEDIRELLLNFRSRLI 536

CU207211_2408: domain 1 of 1, from 487 to 549: score 36.0, E = 2.1e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe......ear
E + IARELHD +g +L+a++++l+l+ +++ +++p ++++ +++
CU207211_2 487 EKRAIARELHDDLGAALTALNMHLSLIFQQM--PAEPKftersvKIK 531

ealdeirelarealaevR<-*
+ l i ++ r+ ++ +R
CU207211_2 532 ALLSSITDATRRIQNGLR 549


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 23 0|===
-13 80 0|========
-12 141 37|===*=========
-11 201 304|=================== *
-10 497 707|============================================== *
-9 638 802|==========================================================*
-8 494 618|============================================= *
-7 388 389|===================================*
-6 283 220|===================*======
-5 239 118|==========*===========
-4 131 61|=====*======
-3 81 31|==*=====
-2 54 16|=*===
-1 30 8|*==
0 14 4|*=
1 12 2|*=
2 8 1|*
3 2 0|=
4 1 0|=
5 2 0|=
6 1 0|=
7 0 0|
8 0 0|
> 9 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 889.0897
P(chi-square) = 0

Total sequences searched: 3333

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: