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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Gramella forsetii KT0803  

Data for CU207366  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU207366.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU207366_0831 CDS_938034-934426 97.6 2.3e-27 1
CU207366_3005 CDS_3209205-3211646 86.4 3.3e-24 1
CU207366_1611 CDS_1680181-1678199 72.9 2.2e-20 1
CU207366_2670 CDS_2820352-2822583 71.4 6e-20 1
CU207366_1664 CDS_1740917-1745074 69.9 1.6e-19 1
CU207366_2319 CDS_2497488-2495257 67.3 8.6e-19 1
CU207366_1402 CDS_1469744-1471006 56.5 1e-15 1
CU207366_1676 CDS_1754558-1758778 55.2 2.4e-15 1
CU207366_0036 CDS_54045-49987 53.0 9.7e-15 1
CU207366_0644 CDS_724114-725691 52.9 1e-14 1
CU207366_0006 CDS_3434-6157 50.4 5.5e-14 1
CU207366_0117 CDS_150111-151190 50.0 7.2e-14 1
CU207366_1207 CDS_1281730-1280540 48.6 1.7e-13 1
CU207366_1933 CDS_2063559-2061346 48.0 2.5e-13 1
CU207366_1438 CDS_1506166-1504964 46.9 5.4e-13 1
CU207366_0715 CDS_814854-813760 42.2 1.1e-11 1
CU207366_3168 CDS_3381521-3380067 39.2 8e-11 1
CU207366_1934 CDS_2067226-2063567 36.2 5.7e-10 1
CU207366_0810 CDS_912781-913953 35.1 1.2e-09 1
CU207366_1439 CDS_1507446-1506229 31.5 1.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU207366_0831 1/1 687 752 .. 1 87 [] 97.6 2.3e-27
CU207366_3005 1/1 315 380 .. 1 87 [] 86.4 3.3e-24
CU207366_1611 1/1 433 505 .. 1 87 [] 72.9 2.2e-20
CU207366_2670 1/1 365 430 .. 1 87 [] 71.4 6e-20
CU207366_1664 1/1 1149 1222 .. 1 87 [] 69.9 1.6e-19
CU207366_2319 1/1 369 434 .. 1 87 [] 67.3 8.6e-19
CU207366_1402 1/1 192 260 .. 1 87 [] 56.5 1e-15
CU207366_1676 1/1 871 939 .. 1 87 [] 55.2 2.4e-15
CU207366_0036 1/1 839 906 .. 1 87 [] 53.0 9.7e-15
CU207366_0644 1/1 299 367 .. 1 87 [] 52.9 1e-14
CU207366_0006 1/1 399 466 .. 1 87 [] 50.4 5.5e-14
CU207366_0117 1/1 120 187 .. 1 87 [] 50.0 7.2e-14
CU207366_1207 1/1 187 253 .. 1 87 [] 48.6 1.7e-13
CU207366_1933 1/1 520 588 .. 1 87 [] 48.0 2.5e-13
CU207366_1438 1/1 180 248 .. 1 87 [] 46.9 5.4e-13
CU207366_0715 1/1 149 214 .. 1 87 [] 42.2 1.1e-11
CU207366_3168 1/1 271 342 .. 1 87 [] 39.2 8e-11
CU207366_1934 1/1 1001 1069 .. 1 87 [] 36.2 5.7e-10
CU207366_0810 1/1 184 250 .. 1 87 [] 35.1 1.2e-09
CU207366_1439 1/1 181 242 .. 1 80 [. 31.5 1.2e-08

Alignments of top-scoring domains:
CU207366_0831: domain 1 of 1, from 687 to 752: score 97.6, E = 2.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTPL++I+g+++lL + +el q
CU207366_0 687 SKSEFLANMSHEIRTPLNGIIGFTDLLMR---------SELENSQ-- 722

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +ti+++a +l ++ind+Ld+s+ieag
CU207366_0 723 ----------QKYMQTIYNSAISLMDIINDVLDFSKIEAG 752

CU207366_3005: domain 1 of 1, from 315 to 380: score 86.4, E = 3.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++ H+LR PLt+++gy++l+++ t+l+e+q
CU207366_3 315 SREQFMAAITHDLRSPLTTVMGYTDLIQK---------TDLNEKQ-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl i++++e +lrL+ndlLdls++eag
CU207366_3 351 ----------KHYLTQIKKSSEFILRLVNDLLDLSKLEAG 380

CU207366_1611: domain 1 of 1, from 433 to 505: score 72.9, E = 2.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl +sHEL+TP+t+I+gy++lLl+ + ++++ +++
CU207366_1 433 RKEGFLKLVSHELKTPVTSIKGYVQLLLT-----MLPEANQENGELP 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ yl++i+ ++erl rLi+++Ldlsrie++
CU207366_1 475 ---------VKPYLNRIETQVERLIRLISEMLDLSRIEHN 505

CU207366_2670: domain 1 of 1, from 365 to 430: score 71.4, E = 6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fl ++ HELRTPL a+ g+++lLle + +e q
CU207366_2 365 AKAQFLTTITHELRTPLYAVTGLTHLLLE---------ESPTESQ-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++++ ++e+ll+Lin++Ldl ++ea+
CU207366_2 401 ----------KEHLNSLKFSGEYLLSLINNILDLNKLEAN 430

CU207366_1664: domain 1 of 1, from 1149 to 1222: score 69.9, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl ++sHEL+TP+t+I+gy++lLl+ l +te + + ++
CU207366_1 1149 RKEDFLKMVSHELKTPVTSIKGYTQLLLD----MLMASTEINLDSIP 1191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i++++ rl rLi ++Ldlsrie
CU207366_1 1192 ---------LKPSLERIDSQVSRLTRLIAEILDLSRIEGD 1222

CU207366_2319: domain 1 of 1, from 369 to 434: score 67.3, E = 8.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHE+RTPL +++g+++lLle e+s ++
CU207366_2 369 LKTRFFSTVSHEIRTPLYGVIGLTSLLLE----------EKSLGKH- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++ +a++ll+Lind+L++ ++e++
CU207366_2 405 ----------KSDLKSLKFSADYLLALINDVLQMNKMESN 434

CU207366_1402: domain 1 of 1, from 192 to 260: score 56.5, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+ +sHE++TPL++I++ a l++++ +e+ e+
CU207366_1 192 LKTKFLSLVSHEFKTPLSGILTSATLAEKYIK------EEQQEKR-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ti++ +++l++++nd+L ++r+++g
CU207366_1 231 ----------EKHLLTIRNKVHYLNNILNDFLSIERLDSG 260

CU207366_1676: domain 1 of 1, from 871 to 939: score 55.2, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ n+sHE+RTPLt I+g +e L+ ++ +l+ +
CU207366_1 871 MKMDFFTNVSHEFRTPLTLIKGPLEYLQQKG-------KDLDYSII- 909

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +++llrL+ +lLd++++++g
CU207366_1 910 ----------ENQYAMMYKNTKYLLRLLTQLLDFEKMDQG 939

CU207366_0036: domain 1 of 1, from 839 to 906: score 53.0, E = 9.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+sHE+RTP+t ++g++ L e++ + ++
CU207366_0 839 LKQQFFTNISHEIRTPVTLMLGAVNRLIERS-------SFVEKKE-- 876

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ti++ +++ll+L+n+lLd+ +e +
CU207366_0 877 ----------TTPVRTIQKHGNHLLQLVNELLDFRNLELE 906

CU207366_0644: domain 1 of 1, from 299 to 367: score 52.9, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HE++TP+++I ++++++++ ++ e ++
CU207366_0 299 IKTDFINNMTHEFKTPIATINLALDAIKN------PKVIEDRSKV-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i++e +r+ ++++++L +s++e +
CU207366_0 338 ----------SRYLQMIRDENKRMHAQVENVLRISKLEKN 367

CU207366_0006: domain 1 of 1, from 399 to 466: score 50.4, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k f+ +lsHE++TPLt I +e + + +++ + +
CU207366_0 399 SKINFFTALSHEFKTPLTLITSSIESISD--------HPNKELKSI- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++ ++rllrLin+lLd+ ++e+g
CU207366_0 437 ----------SYETNLIINNSRRLLRLINELLDFRKLESG 466

CU207366_0117: domain 1 of 1, from 120 to 187: score 50.0, E = 7.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef+ n+sHEL+TPL +++gy+ +Ll+ ++ ++ ++
CU207366_0 120 YRKEFMGNVSHELKTPLFTVQGYILTLLD---------GAHKDKVIR 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++ r +erl ++ dl ++++e+g
CU207366_0 158 ----------KKYLARANRGVERLIYIVKDLDMITKLETG 187

CU207366_1207: domain 1 of 1, from 187 to 253: score 48.6, E = 1.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ ++sHE+ TPL+ +++ +e+L + ++ +e+q
CU207366_1 187 NLKQFTEDVSHEMQTPLAIMQAKIETLFD--------QQNINEKQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++++ +++rl +L n+l l++i+++
CU207366_1 224 ----------YEQLSSLQFDIQRLKQLNNRLILLAKIDNN 253

CU207366_1933: domain 1 of 1, from 520 to 588: score 48.0, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f +lsH+L+ PL +I +ya++L+e ++t+l e
CU207366_1 520 ELELFSHGLSHDLKAPLRGIDAYAHILKE------DHYTDLQKEG-- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++til++ae + +Li+d+L ++ +
CU207366_1 559 ----------QMAVDTILSSAEEMKNLIDDILSFAGVTNR 588

CU207366_1438: domain 1 of 1, from 180 to 248: score 46.9, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+L+ PL+ I+ ++elL++e + ++ +e++
CU207366_1 180 ELEKFASLVSHDLKSPLANIISLSELLKDENE------GKFNEDT-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e + +++ +l++ i+ +L + r ++
CU207366_1 219 ----------EQYIEYLVESSYSLRNYIDGILGFYRSDHV 248

CU207366_0715: domain 1 of 1, from 149 to 214: score 42.2, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +a+++HEL+TPL I+g+ael++ +++ ++
CU207366_0 149 ILGEITAGIAHELNTPLGNILGFAELIKS---------STKENQT-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+++a + ++++ l+ ++ +
CU207366_0 185 ----------KKDTNKIIKAAIYSREIVKKLMFFACEMPQ 214

CU207366_3168: domain 1 of 1, from 271 to 342: score 39.2, E = 8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ ++HE+++PLt +r+ ++ ++++dk + + e +
CU207366_3 271 AWREMAKQVAHEIKNPLTPMRLSVQSFQRNFDK-----NDPDIELK- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ey +t++++++ ++++ + + ++++ a+
CU207366_3 312 ---------VTEYSNTLINQIDTMSSIASAFSNFAKMPAQ 342

CU207366_1934: domain 1 of 1, from 1001 to 1069: score 36.2, E = 5.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++ sH+L PL++I++ +++L + + ++l+e+
CU207366_1 1001 DLEQFVSICSHDLQEPLATIKFGSDVLGKMYA------SKLDEKG-- 1039

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i+++++rl+++i+ lL+ sri+ +
CU207366_1 1040 ----------ENYIKYIKDASDRLSAQIRALLEHSRIGKN 1069

CU207366_0810: domain 1 of 1, from 184 to 250: score 35.1, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ n+sHEL TP++ + +elLle d +l q
CU207366_0 184 DQKQFIENASHELQTPIAISINKLELLLE--------DNDLKVSQ-- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + t+++ +erl+r + lL ls+ie+
CU207366_0 221 ----------ANRIVTVIENLERLSRFNQSLLLLSKIENK 250

CU207366_1439: domain 1 of 1, from 181 to 242: score 31.5, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++++sH+L+ PL+ ++ +a++L+ ++ +e + +
CU207366_1 181 ILTEFASTVSHDLKMPLANMIITADMLKVKY-------GEILDVKG- 219

peLRledpeyreyletilreaerllrLindlLd<-*
+eyl+ +++++ l++ i+ lLd
CU207366_1 220 ----------KEYLDYLKQSGLTLSDYISGLLD 242


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 1 0|=
-14 35 0|===
-13 91 2|*=======
-12 214 81|======*===========
-11 454 424|===================================*==
-10 635 788|===================================================== *
-9 650 813|======================================================= *
-8 571 609|================================================ *
-7 366 384|===============================*
-6 239 221|==================*=
-5 123 121|==========*
-4 84 64|=====*=
-3 44 34|==*=
-2 27 17|=*=
-1 10 9|*
0 8 4|*
1 4 2|*
2 3 1|*
> 3 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 295.4593
P(chi-square) = 0

Total sequences searched: 3584

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: