Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Gramella forsetii KT0803  

Data for CU207366  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CU207366.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU207366_2608 CDS_2759217-2761106 115.2 1.2e-32 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU207366_2608 1/1 435 520 .. 1 94 [] 115.2 1.2e-32

Alignments of top-scoring domains:
CU207366_2608: domain 1 of 1, from 435 to 520: score 115.2, E = 1.2e-32
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNL ++ SL+ LQ+ +++d+++ ++a+ sqnRV+S
CU207366_2 435 EIHHRVKNNLEMVKSLIALQSAQIEDPAT-----KDAMIASQNRVQS 476

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m +iH++LY++ +l+++++++Y+ +L e ++++++ +++ ++++ +
CU207366_2 477 MGIIHQKLYQGTNLGSIEMKDYFLNLSEGILDTFNAEDK-VKIE--C 520


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 5 0|=
-14 17 0|==
-13 38 22|=*=
-12 183 235|============== *
-11 776 655|==============================================*=========
-10 598 848|=========================================== *
-9 727 716|===================================================*
-8 518 480|==================================*==
-7 259 285|=================== *
-6 273 158|===========*========
-5 87 85|======*
-4 42 45|===*
-3 27 23|=*
-2 11 12|*
-1 14 6|*
0 5 3|*
1 2 1|*
2 0 0|
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 215.3194
P(chi-square) = 4.194e-309

Total sequences searched: 3584

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: