Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Gramella forsetii KT0803  

Data for CU207366  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CU207366.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU207366_2599 CDS_2745547-2747316 38.0 5.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU207366_2599 1/1 391 452 .. 1 64 [. 38.0 5.7e-11

Alignments of top-scoring domains:
CU207366_2599: domain 1 of 1, from 391 to 452: score 38.0, E = 5.7e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHD +g L+ ikl+ + ++ d+ ee ++ l++
CU207366_2 391 ERQRIANDLHDNLGSLLATIKLHFQNLKVKK--DRLKEEEDKILKQT 435

relarealaevRrllgd<-*
+l++ea++evR ++++
CU207366_2 436 DDLLDEAYQEVRKIAHA 452


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 74 0|======
-13 193 0|==============
-12 274 40|==*=================
-11 343 328|=======================*=
-10 729 762|===================================================== *
-9 774 865|======================================================== *
-8 485 667|=================================== *
-7 308 419|====================== *
-6 168 237|============ *
-5 122 127|=========*
-4 45 66|====*
-3 36 34|==*
-2 12 17|=*
-1 5 8|*
0 6 4|*
1 2 2|*
2 3 1|*
3 1 0|=
> 4 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1489.3279
P(chi-square) = 0

Total sequences searched: 3584

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: