Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Bradyrhizobium sp. ORS278  

Data for CU234118  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CU234118.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU234118_3306 CDS_3681077-3679989 105.7 1.2e-29 1
CU234118_5648 CDS_6187618-6186689 57.1 7.5e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU234118_3306 1/1 160 243 .. 1 94 [] 105.7 1.2e-29
CU234118_5648 1/1 114 196 .. 1 94 [] 57.1 7.5e-16

Alignments of top-scoring domains:
CU234118_3306: domain 1 of 1, from 160 to 243: score 105.7, E = 1.2e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRV N+LQ+I+SLL LQa +++ +v ++aL + +RV++
CU234118_3 160 EVNHRVGNSLQIIASLLHLQANSSTQDDV-----KAALTNAMGRVAA 201

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++H++LY+s dl++v + +Yl+ L+++L++s+++ + l
CU234118_3 202 VAQVHRRLYTSQDLKSVMLNQYLDSLLDDLRRSAEGNRMSR-----L 243

CU234118_5648: domain 1 of 1, from 114 to 196: score 57.1, E = 7.5e-16
*->EIHHRVKNNLQvISSLLrLQarkfk...deevikdEVleaLrEsqnR
E +HRV NN Q IS+LL++Q r++ ++++++ ++L E+q R
CU234118_5 114 ELQHRVANNIQFISGLLMMQKRQAAadpSRAA------AILSEAQTR 154

VlSmAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl
+++ +H++L+ + ++++++Yl+ ++++ +qs g ++
CU234118_5 155 LETISRVHRMLHDP-SRMNLEIGPYLQTICNDVLQSSGARDV-------A 196

<-*

CU234118_5 - -


Histogram of all scores:
score obs exp (one = represents 32 sequences)
----- --- ---
-15 16 0|=
-14 42 0|==
-13 137 42|=*===
-12 420 441|=============*
-11 1880 1228|======================================*====================
-10 1448 1589|============================================== *
-9 1088 1342|================================== *
-8 744 900|======================== *
-7 384 534|============ *
-6 315 297|=========*
-5 103 160|====*
-4 55 84|==*
-3 34 44|=*
-2 13 23|*
-1 13 12|*
0 5 6|*
1 4 3|*
2 4 1|*
3 0 0|
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
8 1 0|=
9 2 0|=
10 1 0|=
11 0 0|
12 1 0|=
> 13 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 731.3267
P(chi-square) = 0

Total sequences searched: 6752

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: