Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Bradyrhizobium sp. ORS278  

Data for CU234118  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CU234118.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU234118_5161 CDS_5644530-5643166 48.7 7.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU234118_5161 1/1 240 310 .. 1 70 [] 48.7 7.5e-14

Alignments of top-scoring domains:
CU234118_5161: domain 1 of 1, from 240 to 310: score 48.7, E = 7.5e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ER+ IARELHD+ g +L+a++ +++++ rl ++d + ++ r++
CU234118_5 240 ERKEIARELHDEFGPHLFALRAHASALMRLP--EADRLdvgAMRRHG 284

deirelarealaevRrllgdLRpaal<-*
++i + ++ ++ Rr+l +LRp +l
CU234118_5 285 QAILDQVNAVQQFNRRILERLRPIGL 310


Histogram of all scores:
score obs exp (one = represents 21 sequences)
----- --- ---
-15 2 0|=
-14 19 0|=
-13 88 0|=====
-12 162 75|===*====
-11 304 615|=============== *
-10 856 1428|========================================= *
-9 1193 1622|========================================================= *
-8 986 1250|=============================================== *
-7 909 785|=====================================*======
-6 701 444|=====================*============
-5 618 238|===========*==================
-4 336 124|=====*==========
-3 180 64|===*=====
-2 129 32|=*=====
-1 83 16|*===
0 57 8|*==
1 30 4|*=
2 19 2|*
3 15 1|*
4 10 0|=
5 9 0|=
6 4 0|=
7 2 0|=
8 1 0|=
9 2 0|=
10 0 0|
> 11 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2821.5740
P(chi-square) = 0

Total sequences searched: 6752

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: