Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CU458896  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CU458896.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU458896_3513 CDS_3587109-3585619 121.3 3e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU458896_3513 1/1 296 378 .. 1 94 [] 121.3 3e-34

Alignments of top-scoring domains:
CU458896_3513: domain 1 of 1, from 296 to 378: score 121.3, E = 3e-34
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ + e+ +eaL Es++RV S
CU458896_3 296 EIHHRVKNNLQTVAALLRLQARRTPNDEA-----REALFESVRRVSS 337

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d + v+++e+++++ + + ++v+ + ++ +
CU458896_3 338 IALVHDALSMSVD-EEVNLDEVIDRIMPIMTDVATVDTK---VR--V 378


Histogram of all scores:
score obs exp (one = represents 25 sequences)
----- --- ---
-15 6 0|=
-14 26 0|==
-13 71 30|=*=
-12 324 323|============*
-11 1446 899|===================================*======================
-10 1165 1164|==============================================*
-9 718 983|============================= *
-8 549 659|====================== *
-7 242 391|========== *
-6 205 218|========*
-5 76 117|====*
-4 38 62|==*
-3 24 32|=*
-2 10 17|*
-1 14 8|*
0 1 4|*
1 2 2|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 564.6590
P(chi-square) = 0

Total sequences searched: 4920

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: