Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

5 accessions found for Acinetobacter baumannii AYE  

Data for CU459141  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU459141.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU459141_3001 CDS_3227133-3229940 93.7 2.9e-26 1
CU459141_2128 CDS_2306353-2302898 77.8 9.7e-22 1
CU459141_0101 CDS_118320-116962 72.2 3.6e-20 1
CU459141_1340 CDS_1480735-1483389 68.5 4e-19 1
CU459141_1127 CDS_1277771-1279129 62.1 2.7e-17 1
CU459141_2889 CDS_3096895-3095246 61.6 3.6e-17 1
CU459141_3329 CDS_3591979-3593547 59.9 1.1e-16 1
CU459141_3019 CDS_3246750-3248126 59.1 1.8e-16 1
CU459141_1264 CDS_1400629-1402032 58.8 2.3e-16 1
CU459141_0574 CDS_607866-609524 56.7 8.9e-16 1
CU459141_1480 CDS_1639605-1638496 56.2 1.3e-15 1
CU459141_0177 CDS_204169-200672 53.0 1e-14 1
CU459141_0701 CDS_751481-752815 50.5 5e-14 1
CU459141_1272 CDS_1408948-1410276 50.4 5.5e-14 1
CU459141_0247 CDS_271910-270453 47.0 5e-13 1
CU459141_0551 CDS_581140-582474 41.8 1.5e-11 1
CU459141_1711 CDS_1884413-1883328 41.6 1.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU459141_3001 1/1 289 355 .. 1 87 [] 93.7 2.9e-26
CU459141_2128 1/1 680 746 .. 1 87 [] 77.8 9.7e-22
CU459141_0101 1/1 224 290 .. 1 87 [] 72.2 3.6e-20
CU459141_1340 1/1 656 724 .. 1 87 [] 68.5 4e-19
CU459141_1127 1/1 224 290 .. 1 87 [] 62.1 2.7e-17
CU459141_2889 1/1 314 379 .. 1 87 [] 61.6 3.6e-17
CU459141_3329 1/1 313 377 .. 1 87 [] 59.9 1.1e-16
CU459141_3019 1/1 240 306 .. 1 87 [] 59.1 1.8e-16
CU459141_1264 1/1 236 302 .. 1 87 [] 58.8 2.3e-16
CU459141_0574 1/1 332 396 .. 1 87 [] 56.7 8.9e-16
CU459141_1480 1/1 137 194 .. 1 79 [. 56.2 1.3e-15
CU459141_0177 1/1 804 869 .. 1 87 [] 53.0 1e-14
CU459141_0701 1/1 218 280 .. 1 87 [] 50.5 5e-14
CU459141_1272 1/1 222 284 .. 1 87 [] 50.4 5.5e-14
CU459141_0247 1/1 260 318 .. 1 87 [] 47.0 5e-13
CU459141_0551 1/1 199 267 .. 1 87 [] 41.8 1.5e-11
CU459141_1711 1/1 139 203 .. 1 87 [] 41.6 1.7e-11

Alignments of top-scoring domains:
CU459141_3001: domain 1 of 1, from 289 to 355: score 93.7, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g+++lLl+ ++ls eq
CU459141_3 289 AKSVFLANISHELRTPLNSIDGFIHLLLR--------QQNLSNEQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti++++ +ll+Lind+Ld+s+i+ag
CU459141_3 326 ----------NLYLQTIRKSSAHLLALINDVLDFSKIDAG 355

CU459141_2128: domain 1 of 1, from 680 to 746: score 77.8, E = 9.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gy++lL++ +e+ +eq
CU459141_2 680 AKSRYVIGISHELRTPLNSILGYSQLLQK---------QEQLSEQG- 716

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i r++++l +Li+ lLdl+rie+g
CU459141_2 717 ----------KMALGVISRSGQHLTSLIDGLLDLARIETG 746

CU459141_0101: domain 1 of 1, from 224 to 290: score 72.2, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHELRTPLt+++gy+e+ + ++ ++
CU459141_0 224 MRKDFVDNISHELRTPLTVLSGYIETFTD--------QEDINPRW-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++++++r+++L+ndlL ls +e++
CU459141_0 261 ----------KRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

CU459141_1340: domain 1 of 1, from 656 to 724: score 68.5, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++I+g+a++L + +e++e+++
CU459141_1 656 LRSALLSSVSHDLRSPLASIIGAADTLAN-------FKAEMTEQDQ- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++leti+ e+erl+r i++lLd++r++++
CU459141_1 695 ----------QDLLETIHLEGERLDRYIQNLLDMTRLGHE 724

CU459141_1127: domain 1 of 1, from 224 to 290: score 62.1, E = 2.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHELR PL+aI++ +++L++++ ++ +e +
CU459141_1 224 AEQRFTADASHELRSPLSAIQMRLQVLQRKY-------QHIPELD-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i++++ r +++++lL l+r+e +
CU459141_1 262 -----------HDFERIQEDVSRSTKILENLLLLARLEPN 290

CU459141_2889: domain 1 of 1, from 314 to 379: score 61.6, E = 3.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++++sHELRTP++ Ir+ +e+L e e + +r
CU459141_2 314 AQRELMRAVSHELRTPVARIRFGTEMLAE----------EDDYNHR- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++++e l+ Li+++++++++e+g
CU459141_2 350 ----------MHQVDMIDKDIEALNTLIDEIMTYAKLEQG 379

CU459141_3329: domain 1 of 1, from 313 to 377: score 59.9, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI + elL++ +e+q
CU459141_3 313 ALGQLSASIAHEIRNPLAAIVQANELLKD----------SDPEQQ-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i ++++r++++++d L l+r e
CU459141_3 348 ----------NTLRHIIGKQTKRIDSIVQDTLGLARSERT 377

CU459141_3019: domain 1 of 1, from 240 to 306: score 59.1, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f ++l+HE+RTP++ +++ ++++l ++ +
CU459141_3 240 KLSDFSSDLAHEIRTPINNLMTQTQVCLS---------RSRDINT-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l + l+e erl r+++d+L l+++e+g
CU459141_3 276 ---------YQEVLFSNLEEFERLARMVSDMLFLAKAEHG 306

CU459141_1264: domain 1 of 1, from 236 to 302: score 58.8, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f +++HE+RTPL+ ++g +e++l+ +e+s eq
CU459141_1 236 QLNRFSEDIAHEFRTPLNNLIGQTEIALT---------GERSVEQ-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l + l++ +rl r+i+ +L l+r+++
CU459141_1 272 ---------YEDLLVSHLDDYHRLKRMIDSMLFLARADQK 302

CU459141_0574: domain 1 of 1, from 332 to 396: score 56.7, E = 8.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+ sHEL+TPL+++++ +e+++++ ++++e+
CU459141_0 332 SRRQWVADTSHELKTPLAVLQAQIEAMQDGI-------RKATPEH-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + r++ +l +L +dl dl++++a+
CU459141_0 370 -------------LDAMMRQVSSLKKLTQDLADLAQADAQ 396

CU459141_1480: domain 1 of 1, from 137 to 194: score 56.2, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HE+++PL++Irg+++lL + l++e
CU459141_1 137 VARQLVRGVAHEIKNPLAGIRGATQLLAR----------SLNDES-- 171

peLRledpeyreyletilreaerllrLindlL<-*
y+e++++i++e++rl +L + +L
CU459141_1 172 ---------YAEFTDIIINEVDRLTNLADTML 194

CU459141_0177: domain 1 of 1, from 804 to 869: score 53.0, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +P++a r+++ +L+ + +ee+
CU459141_0 804 SKSRFIAAASHDLLQPMHAARLFSTVLEQ---------SISTEED-- 839

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++r++ +++++ lLd++r+e g
CU459141_0 840 ----------RQTLQQLDRALYGAESMLSALLDIARLEGG 869

CU459141_0701: domain 1 of 1, from 218 to 280: score 50.5, E = 5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTP+ta+ + +++Ll ++ +e+
CU459141_0 218 EQKQFIADAAHELRTPVTALNLQTKILLSQF-----------PEH-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ + + + r+++L+ +lL l++ +
CU459141_0 252 -----------ESLQNLSKGLARIQHLVTQLLALAKQDVT 280

CU459141_1272: domain 1 of 1, from 222 to 284: score 50.4, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+ ++sHELRTPLt ++g+++l+++++ ++
CU459141_1 222 REREFTGDVSHELRTPLTILKGNVQLCQAKF-------GD------- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++ +e ++ L++ lL ++r
CU459141_1 255 ----------DKSLVRLHNTIEDMQLLVDTLLAIARNTVK 284

CU459141_0247: domain 1 of 1, from 260 to 318: score 47.0, E = 5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt Ir++ae+L +
CU459141_0 260 ERRIMLAGISHDLRTPLTRIRLTAEMLPD------------------ 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e + +++ +++++n++ + r ++
CU459141_0 289 ----------EFLREGLVYDVDDMDAILNQFISYMRDGSD 318

CU459141_0551: domain 1 of 1, from 199 to 267: score 41.8, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ +sH+LR P ++++g++e+L + ++++l+e +
CU459141_0 199 SKTKFFSIISHDLRAPFHGLLGFSEVLAK-------ERETLDESSI- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ +++ +L++ lL+ + +e g
CU459141_0 238 ----------QNIADYLYDTSQSTYNLLESLLTWAMAEGG 267

CU459141_1711: domain 1 of 1, from 139 to 203: score 41.6, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a+++HELRTP+t ++g ++ + ++++ ++
CU459141_1 139 NAQVWNAAIAHELRTPITILQGRLQGIIDGVF----------KPD-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++l+++e l++L++dl++ls e++
CU459141_1 174 ----------EVLFKSLLNQVEGLSHLVEDLRTLSLVENQ 203


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 6 0|=
-13 43 2|*===
-12 191 82|======*========
-11 367 427|============================= *
-10 652 793|=================================================== *
-9 710 819|======================================================= *
-8 603 613|===============================================*
-7 384 386|=============================*
-6 283 222|=================*====
-5 160 122|=========*===
-4 94 65|====*===
-3 36 34|==*
-2 25 18|=*
-1 20 9|*=
0 3 4|*
1 4 2|*
2 2 1|*
3 2 0|=
4 3 0|=
5 1 0|=
> 6 18 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 246.7668
P(chi-square) = 0

Total sequences searched: 3659

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: