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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

6 accessions found for Erwinia tasmaniensis Et1/99  

Data for CU468135  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU468135.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU468135_2725 CDS_3032114-3034843 95.7 7.7e-27 1
CU468135_2547 CDS_2852413-2851097 90.2 2.8e-25 1
CU468135_1229 CDS_1377580-1380435 79.0 4.1e-22 1
CU468135_0309 CDS_369246-371585 75.0 5.7e-21 1
CU468135_1008 CDS_1120976-1122403 70.4 1.1e-19 1
CU468135_0094 CDS_111273-109894 60.4 7.8e-17 1
CU468135_0029 CDS_49344-48295 60.3 7.9e-17 1
CU468135_1308 CDS_1472856-1471471 59.6 1.3e-16 1
CU468135_1096 CDS_1220725-1222077 58.4 2.7e-16 1
CU468135_3218 CDS_3584681-3583332 55.1 2.4e-15 1
CU468135_3362 CDS_3746497-3743825 55.0 2.5e-15 1
CU468135_0335 CDS_392412-391357 49.9 7.3e-14 1
CU468135_1677 CDS_1900568-1899288 42.2 1.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU468135_2725 1/1 292 357 .. 1 87 [] 95.7 7.7e-27
CU468135_2547 1/1 203 269 .. 1 87 [] 90.2 2.8e-25
CU468135_1229 1/1 471 536 .. 1 87 [] 79.0 4.1e-22
CU468135_0309 1/1 282 347 .. 1 87 [] 75.0 5.7e-21
CU468135_1008 1/1 249 317 .. 1 87 [] 70.4 1.1e-19
CU468135_0094 1/1 238 300 .. 1 87 [] 60.4 7.8e-17
CU468135_0029 1/1 129 186 .. 1 79 [. 60.3 7.9e-17
CU468135_1308 1/1 239 303 .. 1 87 [] 59.6 1.3e-16
CU468135_1096 1/1 230 293 .. 1 87 [] 58.4 2.7e-16
CU468135_3218 1/1 233 293 .. 1 87 [] 55.1 2.4e-15
CU468135_3362 1/1 661 728 .. 1 87 [] 55.0 2.5e-15
CU468135_0335 1/1 136 196 .. 1 87 [] 49.9 7.3e-14
CU468135_1677 1/1 211 271 .. 1 87 [] 42.2 1.1e-11

Alignments of top-scoring domains:
CU468135_2725: domain 1 of 1, from 292 to 357: score 95.7, E = 7.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l++ q
CU468135_2 292 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TALNSTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+r+a+ ll +ind+Ld+s++eag
CU468135_2 328 ----------RDYLHTIERSANNLLGIINDVLDFSKLEAG 357

CU468135_2547: domain 1 of 1, from 203 to 269: score 90.2, E = 2.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + ++l r
CU468135_2 203 ARRNFFANVSHELRTPLTVLKGYLEMMSD---------SALEGGLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++t++++a+r+++L+ +lL+lsriea
CU468135_2 240 ----------DKAVQTMQEQAKRMDSLVAQLLTLSRIEAA 269

CU468135_1229: domain 1 of 1, from 471 to 536: score 79.0, E = 4.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l++
CU468135_1 471 SKSMFLATVSHELRTPLYGIIGNLDLLKT---------KALPAGA-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +++ ll++i+d+Ld+s+ie++
CU468135_1 507 ----------ESLVTAMNNSSSLLLKIISDILDFSKIESE 536

CU468135_0309: domain 1 of 1, from 282 to 347: score 75.0, E = 5.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CU468135_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDPEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CU468135_0 318 ----------LKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

CU468135_1008: domain 1 of 1, from 249 to 317: score 70.4, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
CU468135_1 249 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTADQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ +++++l+rLi++lLd+ r a
CU468135_1 288 ----------REVVTILNDSSRHLQRLIEQLLDYNRKLAD 317

CU468135_0094: domain 1 of 1, from 238 to 300: score 60.4, E = 7.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ l+++ + ++
CU468135_0 238 AQQRLLSDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea+rl+ +indlL lsr ++
CU468135_0 274 -------------LGRIEMEAQRLDGMINDLLVLSRTQHK 300

CU468135_0029: domain 1 of 1, from 129 to 186: score 60.3, E = 7.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CU468135_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CU468135_0 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CU468135_1308: domain 1 of 1, from 239 to 303: score 59.6, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+ +rg +e++++++ +l+++
CU468135_1 239 MRRAFMADISHELRTPLAILRGELEAIQDGV-------RKLTPQS-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++d+ +ls ++g
CU468135_1 277 -------------IMSLQGEVATLTKLVDDVHQLSLSDEG 303

CU468135_1096: domain 1 of 1, from 230 to 293: score 58.4, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l ++sHELR PL+ +++++ l++ +++ +
CU468135_1 230 AREELLHDVSHELRSPLARLQLATGLARQ------------TPDSV- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+rl+++i +lL+lsr+e+
CU468135_1 264 ----------YASLDRIDEEARRLDKMIGELLTLSRAEHK 293

CU468135_3218: domain 1 of 1, from 233 to 293: score 55.1, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CU468135_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMAE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CU468135_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CU468135_3362: domain 1 of 1, from 661 to 728: score 55.0, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g ae+L +l + ++++
CU468135_3 661 LRNALLSALSHDLRTPLTVLFGQAEILTLDL-------ASANSPY-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ rL+n+lLd++r+++g
CU468135_3 699 ----------AGQASAMREQTLNTIRLVNNLLDMARLQSG 728

CU468135_0335: domain 1 of 1, from 136 to 196: score 49.9, E = 7.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+++r+++elL+ ++ +q
CU468135_0 136 QERLFTADVAHELRTPLAGLRLHLELLEQ-----------QGIQQ-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++rl + i++lL lsr+++
CU468135_0 170 -------------GAMLVARIDRLIHVIEQLLMLSRAGQA 196

CU468135_1677: domain 1 of 1, from 211 to 271: score 42.2, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + l+e +
CU468135_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LTESE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r++ +l++Li++lL+++r++ +
CU468135_1 245 -------------SAALNRDIGQLESLIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 2 0|=
-14 11 0|=
-13 59 2|*=====
-12 123 78|=======*====
-11 320 406|============================== *
-10 575 753|===================================================== *
-9 633 778|==========================================================*
-8 611 582|====================================================*===
-7 408 367|=================================*====
-6 300 211|===================*========
-5 152 115|==========*===
-4 99 62|=====*===
-3 36 32|==*=
-2 33 17|=*=
-1 30 8|*==
0 7 4|*
1 4 2|*
2 5 1|*
3 2 0|=
4 0 0|
> 5 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 253.5542
P(chi-square) = 0

Total sequences searched: 3484

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: