Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Cupriavidus taiwanensis  

Data for CU633749  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU633749.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU633749_0492 CDS_509947-508400 67.5 1.2e-19 1
CU633749_0233 CDS_237288-235846 52.5 2.1e-15 1
CU633749_0237 CDS_242718-240721 26.9 3.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU633749_0492 1/1 282 347 .. 1 87 [] 67.5 1.2e-19
CU633749_0233 1/1 259 324 .. 1 87 [] 52.5 2.1e-15
CU633749_0237 1/1 431 494 .. 1 82 [. 26.9 3.6e-08

Alignments of top-scoring domains:
CU633749_0492: domain 1 of 1, from 282 to 347: score 67.5, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ e+s+e++
CU633749_0 282 TQKRFIADAAHQMKTPLAGLRMQAELAQR----------EQSPEEL- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i ++er +L+ +lL l+r+e+
CU633749_0 318 ----------RRSLAQIAGSSERTAHLVTQLLSLARMENL 347

CU633749_0233: domain 1 of 1, from 259 to 324: score 52.5, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE++ PL+aI g+aelL+e e+++ +r
CU633749_0 259 YVEHYIHTLTHEMKSPLAAIGGAAELLQE----------EMPAADR- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+ ++ rl+ +i+ lL l+ e+
CU633749_0 295 ----------QRFVANIRTQSGRLETMIRKLLALAEVEQR 324

CU633749_0237: domain 1 of 1, from 431 to 494: score 26.9, E = 3.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r++++ + l+ ++ l++ +
CU633749_0 431 ALGQMAAGITHELNQPLAALRTFSDNTRV-----LLARGQLDAAE-- 470

peLRledpeyreyletilreaerllrLindlLdls<-*
l+ i +er+ ++ +l ++
CU633749_0 471 -----------GNLSAIAGLTERMGKITGQLKLFA 494


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 5 0|===
-12 21 12|=====*=====
-11 53 62|=========================== *
-10 90 116|============================================= *
-9 108 120|====================================================== *
-8 85 90|=========================================== *
-7 76 56|===========================*==========
-6 32 32|===============*
-5 19 17|========*=
-4 19 9|====*=====
-3 6 5|==*
-2 3 2|*=
-1 6 1|*==
0 0 0|
1 2 0|=
2 1 0|=
3 0 0|
> 4 5 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 31.6254
P(chi-square) = 0.0002311

Total sequences searched: 533

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: