Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Cupriavidus taiwanensis  

Data for CU633750  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU633750.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU633750_0124 CDS_137302-132866 95.2 1.6e-27 2
CU633750_0385 CDS_436025-441193 27.2 2.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU633750_0124 1/2 377 442 .. 1 87 [] 70.4 1.6e-20
CU633750_0385 1/1 1493 1563 .. 1 87 [] 27.2 2.8e-08

Alignments of top-scoring domains:
CU633750_0124: domain 1 of 2, from 377 to 442: score 70.4, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++g +e L + + + e+
CU633750_0 377 AKTAFFSNISHEFRTPLTLMLGPLEDLVR---------RASPGED-- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le +r + rll+L+n lLd+srie+g
CU633750_0 413 ----------RAMLEMTHRNGLRLLKLVNALLDFSRIESG 442

CU633750_0385: domain 1 of 1, from 1493 to 1563: score 27.2, E = 2.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a+++HE ++PLtaI +++++ l++l+ +++e
CU633750_0 1493 VMGSLAASIAHEVNQPLTAIVATVDASLRWLN------RPRPEVA-- 1531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + i++ a r ++i+ l+ l+r
CU633750_0 1532 --------EALDGFTHIRQNALRAADIIRALRALARQAPA 1563


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 4 0|==
-12 15 11|=====*==
-11 34 59|================= *
-10 86 109|=========================================== *
-9 81 113|========================================= *
-8 93 85|==========================================*====
-7 74 53|==========================*==========
-6 38 30|==============*====
-5 28 16|=======*======
-4 18 9|====*====
-3 9 4|=*===
-2 4 2|*=
-1 3 1|*=
0 2 0|=
1 4 0|==
2 0 0|
> 3 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 52.7460
P(chi-square) = 1.208e-08

Total sequences searched: 502

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: