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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Cupriavidus taiwanensis  

Data for CU633751  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CU633751.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU633751_0252 CDS_242691-244517 67.8 1.5e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU633751_0252 1/1 405 471 .. 1 70 [] 67.8 1.5e-20

Alignments of top-scoring domains:
CU633751_0252: domain 1 of 1, from 405 to 471: score 67.8, E = 1.5e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ IA E+HD++gQ L+a+k+ l+l+ ++l ++ + + ++e+
CU633751_0 405 ERKCIAMEIHDELGQLLTALKMDLSLLSMQL--PTGS-GVIQKAEEM 448

relarealaevRrllgdLRpaal<-*
rel++++++ vR+++++LRp+al
CU633751_0 449 RELIEQTIRIVRNVVSHLRPTAL 471


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 2 0|=
-13 13 0|=======
-12 15 5|==*=====
-11 41 47|===================== *
-10 50 110|========================= *
-9 102 125|=================================================== *
-8 66 96|================================= *
-7 59 60|=============================*
-6 55 34|================*===========
-5 42 18|========*============
-4 19 9|====*=====
-3 32 4|=*==============
-2 11 2|*=====
-1 1 1|*
0 1 0|=
1 5 0|===
2 0 0|
> 3 5 -|===


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 114.2747
P(chi-square) = 5.025e-21

Total sequences searched: 576

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: